CF510055

Overview
NameCF510055
Unique NameCF510055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R V IV   RTP G + G L   +AT L   A  AAL    V P  +  V  GNV+ ++   A  AR   L  G+P      T+N++C SG ++I+   Q I     +V++ GG ESMS
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMS 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  104 IVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            IV   RTP G + G L+++ A  LG+I I A ++R  +V+ + V +V +G    A    +   R +AL AG+P  V  TTVN++C S L AI +A+++I+ G   +I+AGG+ESMS
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS 121          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAI-EAALKRANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R+  I    RTP+G + G LS + A  L +I + E  ++   +D   + +V  G    A    +  AR A L AG+P SV  TT+N++C SGL A+  A+++I+ G  D+++AGG+ESMS
Sbjct:    2 REAFICDGIRTPIGRYGGALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS 121          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   80 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            S+ PRDV +V   RTPMG    G   ++ A  L +  IEA  +R   +DP  V++V +G V  +   G   ARQ +L   IP+     TVN++C S + AI  A+Q+IQ G  DV + GG+E M +
Sbjct:    2 SLNPRDVVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGH 127          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  104 IVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            IV   RTP G + G L+++ A  LG+I I A ++R  +V+ + V +V +G    A    +   R +AL AG+P  V  TTVN++C S L AI +A+++I+ G   +I+AGG+ESMS
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS 121          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 2
Query:   80 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLS-ANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            S++PRDV IV  ARTPMG    G   ++ A  L +  I   L R A +DP+ + ++ +G V+     G   AR   L AG+P++V   TVN++C S + A+  A+ +I  G+ DV + GG+E M +
Sbjct:    2 SLQPRDVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHMGH 127          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   80 SIKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            S+ P+DV IV   RTPMG    G    + A KL +  I+A + R  N D  L ++V +G V  +   G   AR  ++ AG+P +    TVN++C S ++A+  ASQSI  G  DV V GG+E M +
Sbjct:    2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGH 127          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAP-ARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            R V IV   RTP G + G L   + T +   A  AAL    V P  V  V  GNV+ ++      AR   L  GIP      T+N++C SG ++I+   Q I    ++V++ GG ESMS
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDAIYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMS 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.494e-13
Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALK-RANVDPSLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            RDV I    RTP+G F G L+ + A  L ++ ++A ++    V    V EVFFG    A    +  AR A L AG+P S+   T+N++CASG+ AI  A ++I  G  ++ +AGG+ESMS
Sbjct:    2 RDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMS 121          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.494e-13
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFLG------TLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            +DV IV   RTPMG   G          LSA  + SI     L+  N+DP+ ++++++G V      G   AR AAL AGIP  V   TVN++C S ++A+  AS++IQ+G  D+ + GG+E M +
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSIL----LRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGH 123          
The following BLAST results are available for this feature:
BLAST of CF510055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THIM_RAT6.707e-1436.973-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
PCAF_ACIAD6.707e-1440.52Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
PAAJ_ECOLX6.707e-1437.50Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
FADA_MARAV6.707e-1438.893-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
CATF_ACIAD6.707e-1440.52Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_SACD28.759e-1437.303-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_ALCBS8.759e-1438.893-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
THIM_BOVIN1.144e-1336.133-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
PCAF_PSEPU1.494e-1340.00Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
FADA_AERS41.494e-1338.103-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-570 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510055 ID=CF510055; Name=CF510055; organism=Citrus sinensis; type=EST; length=450bp
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
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