CF510055

Overview
NameCF510055
Unique NameCF510055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 43/122 (35.25%), Postives = 72/122 (59.02%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            ++V IV   RTPMG    G      A  L +  ++  LKR  +VDP+ ++++++G V      G   AR +AL AG+P S+  TTVN++C S ++A+  AS++I +G  ++ + GG+E M +
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGH 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   80 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV + GG+E M +
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHMGH 127          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   83 IKPRDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            + P DV I+   R+PMG    G   ++ A  L +  ++   KR  NVD   V+++ +G V  +   G   AR  +L AG+P +    TVN++C S + AI  A+Q+I  G  DV V GG+E M +
Sbjct:    3 LNPNDVVIIDAVRSPMGKTKNGVFRNVRAENLSAALVKELFKRNPNVDQKDVEDLIWGCVNQTLEQGFNMARAVSLLAGLPITCAAQTVNRLCGSSMSAIHTAAQAIMTGQGDVFVVGGVEHMGH 127          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 2
Query:   32 ADRDWH*QMAPA-AASDSIKPRDVCIV-----GVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            AD  W  Q AP  + +      DV +V      + R   GGF  T    +  +L S  + A LK  N+ P  + ++  GNVL    G   AR A   + IP +V  +TVN+ C+SGL+A+   +  I+ G  D+ +A G+ESMS
Sbjct:   15 ADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDT----TPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMS 154          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 2
Query:   53 QMAPAAAS-DSIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            Q AP +A        DV +V   RTP+G    G   + +  +L S  + A L+   + P  + ++  GNVL    G   AR A   +GIP +V  +TVN+ C+SGL+A+   +  I+ G  D+ +A G+ESMS
Sbjct:   22 QAAPCSARFPQASASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS 154          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   92 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            +   IV   RTPMG    G   ++ A  L +  ++A L R   +DP+ +++V +G V      G   AR AAL AGIP      TVN++C S ++AI  A+++I  G+ D  + GG+E M +
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEHMGH 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   92 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            +   IV   RTPMG    G   ++ A  L +  ++A L R   +DPSL+++V +G V      G   AR A+L AGIP +    TVN++C S + AI  A+++I  G+ D  + GG+E M +
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALLIRNPQLDPSLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGH 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 2
Query:   95 DVCIVGVARTPM-----GGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQA-PARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            D+ IV   RT +     GGF  TL       L +  ++A ++R ++DPS V ++  G V++    +A   R AA  AG P+SV   TVN+ C+SGL+A+   + SI+ G  D+ +  G+ESMS
Sbjct:   50 DIVIVAAYRTAICKARRGGFKDTLPD----DLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMS 168          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   92 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSN 448
            +D+ IV   RTPMG    G      A  L +  ++  L+R   VDP  ++++++G V      G   AR +AL AGIP+ V   TVN++C S ++A+  A+++I  G  D+ +AGG+E M +
Sbjct:    2 KDIVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHMGH 123          
BLAST of CF510055 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 2
Query:   53 QMAPAAAS-DSIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMS 445
            Q AP +A        DV +V   RTP+G    G     +  +L S  + A L+   + P  + ++  GNVL    G A AR A   +GIP +V  + VN+ C+SGL+A+   +  I+ G  D+ +A G+ESM+
Sbjct:   22 QAAPCSAGFPQASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAGAAMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT 154          
The following BLAST results are available for this feature:
BLAST of CF510055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FADA_VIBFM6.277e-1235.253-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_PSEU26.277e-1236.513-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_MARMS8.198e-1235.203-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
THIK_HUMAN1.398e-1134.033-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIKA_MOUSE1.398e-1134.593-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
FADA_SHELP1.826e-1135.253-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_SHEDO1.826e-1136.073-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
THIK5_ARATH2.385e-1136.593-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
FADA_IDILO2.385e-1135.253-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
THIKB_RAT4.069e-1133.833-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-570 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510055 ID=CF510055; Name=CF510055; organism=Citrus sinensis; type=EST; length=450bp
CCTCACGTGATCCACACTCACTCTGAATCTCGCAGATCGTGATTGGCATT
GACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAAGCCTAGAGATGTT
TGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGATTTCTTGGTACTCT
ATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCTATTGAAGCTGCTC
TTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGAAGTTTTCTTTGGT
AATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCTAGACAGGCTGCATT
GGGTGCAGGAATTCCGAATTCAGTGGTCTGTACTACTGTTAACAAAGTTT
GTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACAGAGTATCCAGTTG
GGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAAGCATGTCTAACGC
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