CF510057 | Citrus Genome Database

Overview


Name	CF510057
Unique Name	CF510057
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	720

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIF15_MOUSE (Kinesin-like protein KIF15 OS=Mus musculus GN=Kif15 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.480e-21
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 2

Query:   95 LSALGDVISALAQ----KSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQTLEK 388
            LS LG VI+AL      K  HI YR+SKLT +L+DSLGG+AKT +  +++P     GET+STL FA+R   I+  A  +    G + +L+ E+  LK+ L +
Sbjct:  292 LSCLGQVITALVDVGNGKQRHICYRDSKLTFLLRDSLGGNAKTAIIANVHPGSRCFGETLSTLNFAQRAKLIKNKAVVNEDTQGNVSQLQAEVKRLKEQLSQ 393

HSP 2 Score: 39.6614 bits (91), Expect = 2.480e-21
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L+LVDLAGSER   + A G RLKEA +INRS
Sbjct:  261 LNLVDLAGSERQKDTHAEGMRLKEAGNINRS 291

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIFC1_HUMAN (Kinesin-like protein KIFC1 OS=Homo sapiens GN=KIFC1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.509e-21
Identity = 40/78 (51.28%), Postives = 60/78 (76.92%), Query Frame = 2

Query:   95 LSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE 328
            LS LG VI AL+ K +H+PYRNSKLT +LQ+SLGG AK LMFV+I+P    + E++++L+FA +V+   +G A++N++
Sbjct:  596 LSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQCVIGTAQANRK 673

HSP 2 Score: 35.8094 bits (81), Expect = 2.509e-21
Identity = 21/35 (60.00%), Postives = 24/35 (68.57%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVG----ERLKEAQHINRS 93
            L LVDLAGSER+D   A+G    ERL+E Q IN S
Sbjct:  561 LSLVDLAGSERLDPGLALGPGERERLRETQAINSS 595

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KINH_LOLPE (Kinesin heavy chain OS=Loligo pealeii PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.245e-21
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 2

Query:   95 LSALGDVISALAQ-KSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE------SGEIRELREEISNLKQTLEKKEAELEQLRRGVTRNTSE 442
            LSALG+VISALA    +H+PYR+SKLT++LQ+SLGG+A+T M +  +P      ET STL F +R  +I+      N+E           + +E ++ LK T+ K EAEL++ R G   +  E
Sbjct:  258 LSALGNVISALADGNKSHVPYRDSKLTRILQESLGGNARTTMVICCSPASYNESETKSTLLFGQRAKTIK-NVVSVNEELTADEWKRRYEKEKERVTKLKATMAKLEAELQRWRTGQAVSVEE 379

HSP 2 Score: 38.1206 bits (87), Expect = 3.245e-21
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L+LVDLAGSE+V K+ A G  L EA++IN+S
Sbjct:  227 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKS 257

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIFC1_CRIGR (Kinesin-like protein KIFC1 OS=Cricetulus griseus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.267e-21
Identity = 41/78 (52.56%), Postives = 60/78 (76.92%), Query Frame = 2

Query:   95 LSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE 328
            LS LG VI AL+ K +H+PYRNSKLT +LQ+SLGG AK LMFV+I+P    + E++++L+FA +V+   +G A++NK+
Sbjct:  545 LSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQCVIGTAQANKK 622

HSP 2 Score: 34.2686 bits (77), Expect = 3.267e-21
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVG----ERLKEAQHINRS 93
            L+LVDLAGSER+D    +G    +RL+E Q IN S
Sbjct:  510 LNLVDLAGSERLDPGLTLGPGERDRLRETQSINSS 544

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIF15_HUMAN (Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.197e-21
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2

Query:   95 LSALGDVISALAQ----KSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQTL 382
            LS LG VI+AL      K  H+ YR+SKLT +L+DSLGG+AKT +  +++P     GET+STL FA+R   I+  A  +    G + +L+ E+  LK+ L
Sbjct:  292 LSCLGQVITALVDVGNGKQRHVCYRDSKLTFLLRDSLGGNAKTAIIANVHPGSRCFGETLSTLNFAQRAKLIKNKAVVNEDTQGNVSQLQAEVKRLKEQL 391

HSP 2 Score: 39.6614 bits (91), Expect = 4.197e-21
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L+LVDLAGSER   + A G RLKEA +INRS
Sbjct:  261 LNLVDLAGSERQKDTHAEGMRLKEAGNINRS 291

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIFC1_RAT (Kinesin-like protein KIFC1 OS=Rattus norvegicus GN=Kifc1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.243e-21
Identity = 41/78 (52.56%), Postives = 60/78 (76.92%), Query Frame = 2

Query:   95 LSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKE 328
            LS LG VI AL+ K +H+PYRNSKLT +LQ+SLGG AK LMFV+I+P    + E++++L+FA +V+   +G A++NK+
Sbjct:  616 LSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQCVIGTAQANKK 693

HSP 2 Score: 33.8834 bits (76), Expect = 4.243e-21
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVG----ERLKEAQHINRS 93
            L+LVDLAGSER+D    +G    +RL+E Q IN S
Sbjct:  581 LNLVDLAGSERLDPGLTLGPGERDRLRETQAINSS 615

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIF7_DICDI (Kinesin-related protein 7 OS=Dictyostelium discoideum GN=kif7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.467e-21
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 2

Query:   95 LSALGDVISALAQKSAHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGEIRELREEISNLKQTLEKKEAELEQLRR 418
            LSALG VI+AL   + ++PYR+SKLT+VLQDSLGG++KT + ++ +P +N   ETI+TL+F  R  +I+    + NK+     EL   I  L + LEK   E E++ R
Sbjct:  282 LSALGKVINALTCGANYVPYRDSKLTRVLQDSLGGNSKTSLIINCSPSNNNEHETITTLQFGTRAKTIK-NQPKINKKI-TYHELELFIIKLAKDLEKSRKECEEITR 387

HSP 2 Score: 38.891 bits (89), Expect = 5.467e-21
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L LVDLAGSER  K+ A G+R++EA++IN S
Sbjct:  251 LFLVDLAGSERAHKTGAEGDRMQEAKNINLS 281

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIF5A_PONAB (Kinesin heavy chain isoform 5A OS=Pongo abelii GN=KIF5A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.484e-21
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 2

Query:   95 LSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGE-----IRELREEISNLKQTLEKKEAELEQLRRGVTRNTSESQK 451
            LSALG+VISALA+ + +++PYR+SK+T++LQDSLGG+ +T MF+  +P      ET STL F +R  +I+  A+ + + + E       + +E+    K+T+ K EAEL + R G   N  E+++
Sbjct:  259 LSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAELSRWRNG--ENVPETER 381

HSP 2 Score: 38.1206 bits (87), Expect = 5.484e-21
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L+LVDLAGSE+V K+ A G  L EA++IN+S
Sbjct:  228 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKS 258

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIF5A_HUMAN (Kinesin heavy chain isoform 5A OS=Homo sapiens GN=KIF5A PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.484e-21
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 2

Query:   95 LSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGE-----IRELREEISNLKQTLEKKEAELEQLRRGVTRNTSESQK 451
            LSALG+VISALA+ + +++PYR+SK+T++LQDSLGG+ +T MF+  +P      ET STL F +R  +I+  A+ + + + E       + +E+    K+T+ K EAEL + R G   N  E+++
Sbjct:  259 LSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAELSRWRNG--ENVPETER 381

HSP 2 Score: 38.1206 bits (87), Expect = 5.484e-21
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L+LVDLAGSE+V K+ A G  L EA++IN+S
Sbjct:  228 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKS 258

[Close]

BLAST of CF510057 vs. ExPASy Swiss-Prot
Match: KIF5A_MOUSE (Kinesin heavy chain isoform 5A OS=Mus musculus GN=Kif5a PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 5.485e-21
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 2

Query:   95 LSALGDVISALAQKS-AHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEHNAIGETISTLKFAERVSSIELGAARSNKESGE-----IRELREEISNLKQTLEKKEAELEQLRRGVTRNTSESQK 451
            LSALG+VISALA+ + +++PYR+SK+T++LQDSLGG+ +T MF+  +P      ET STL F +R  +I+  A+ + + + E       + +E+    K+T+ K EAEL + R G   N  E+++
Sbjct:  259 LSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAELSRWRNG--ENVPETER 381

HSP 2 Score: 38.1206 bits (87), Expect = 5.485e-21
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1

Query:    1 LHLVDLAGSERVDKSEAVGERLKEAQHINRS 93
            L+LVDLAGSE+V K+ A G  L EA++IN+S
Sbjct:  228 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKS 258

The following BLAST results are available for this feature:

BLAST of CF510057 vs. ExPASy Swiss-Prot

BLAST of CF510057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
KIF15_MOUSE	2.480e-21	43.14	Kinesin-like protein KIF15 OS=Mus musculus GN=Kif1...	[more]
KIFC1_HUMAN	2.509e-21	51.28	Kinesin-like protein KIFC1 OS=Homo sapiens GN=KIFC...	[more]
KINH_LOLPE	3.245e-21	41.46	Kinesin heavy chain OS=Loligo pealeii PE=2 SV=1	[more]
KIFC1_CRIGR	3.267e-21	52.56	Kinesin-like protein KIFC1 OS=Cricetulus griseus P...	[more]
KIF15_HUMAN	4.197e-21	43.00	Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF1...	[more]
KIFC1_RAT	4.243e-21	52.56	Kinesin-like protein KIFC1 OS=Rattus norvegicus GN...	[more]
KIF7_DICDI	5.467e-21	44.44	Kinesin-related protein 7 OS=Dictyostelium discoid...	[more]
KIF5A_PONAB	5.484e-21	40.00	Kinesin heavy chain isoform 5A OS=Pongo abelii GN=...	[more]
KIF5A_HUMAN	5.484e-21	40.00	Kinesin heavy chain isoform 5A OS=Homo sapiens GN=...	[more]
KIF5A_MOUSE	5.485e-21	40.00	Kinesin heavy chain isoform 5A OS=Mus musculus GN=...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_125000-572 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF510057 ID=CF510057; Name=CF510057; organism=Citrus sinensis; type=EST; length=720bp
CTTCATCTGGTGGATTTGGCTGGAAGTGAGAGAGTTGATAAATCAGAAGC
TGTAGGTGAAAGATTAAAAGAAGCTCAACATATTAATAGATCACCTTTCA
GCTCTTGGAGATGTCATTTCTGCTCTTGCCCAAAAGAGTGCACATATTCC
TTACAGAAACAGCAAACTTACTCAAGTATTACAGGATTCTTTAGGTGGGC
ATGCTAAAACATTAATGTTTGTACACATAAATCCTGAACATAATGCTATT
GGAGAGACCATTAGCACACTCAAGTTTGCTGAGAGAGTTTCCTCCATAGA
ACTAGGGGCTGCCCGCTCTAACAAAGAAAGTGGTGAAATCCGAGAACTCA
GAGAAGAGATATCGAATCTTAAACAAACATTGGAGAAAAAGGAAGCAGAA
TTGGAACAACTGAGACGTGGGGTAACAAGAAATACTTCAGAATCTCAAAA
ACCAAGAGCAGTTTCACCTTTTCATACTTCAGAATCTCAAAAATCAAGAG
CAGTTTCACCTTTTCATACTTCAGAATCTCAAAAACCAAGAGCAGTTTCA
CCTTTTCATGTGCCACGATATGGAATTAGTGCTAGCTTGAAGCCTGGGAT
AAATCAGCCAAATGATGACAGTAGAAGCCTTGAGCCTAGAAGCACTTCTT
CAGGTAAGCAAAGGAGGTCAAGGGTTCCTTCTGCATTGACGGACAAAGAG
CCATTGCCAAGATTCCTTTA