CF510079

Overview
NameCF510079
Unique NameCF510079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.046e-31
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 3 
Query:  132 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            F +D ++TWGD R +I N G+LL+LSLD+ SGSGFQSK +YLFG++ MQ+KLV G+SAGTVT  Y+
Sbjct:   23 FQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYL 88

HSP 2 Score: 62.003 bits (149), Expect = 8.046e-31
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  413 LQLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L L S G T DEIDFEFLGN SG+PY LHTN++ QGKG++
Sbjct:   86 LYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDK 125
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.874e-27
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  129 AFYQDFDLTWGDKRAKIF-NGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            +F++D  + WGD R KI  N G LLSLSLD+ SGSGFQS +++L+G++++Q+KLV G+SAGTVT +Y+
Sbjct:   28 SFHKDVQIHWGDGRGKILDNVGNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYL 95

HSP 2 Score: 58.151 bits (139), Expect = 2.874e-27
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L S G T DEIDFEFLGN+SG PY LHTN++ +G G++
Sbjct:   95 LKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDK 132
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.341e-27
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  129 AFYQDFDLTWGDKRAKIF-NGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            +F++D  + WGD R KI  N G+LLSLSLD+ SGSGFQS +++L+G+ ++Q+KLV G+SAGTVT +Y+
Sbjct:   23 SFHKDVKIHWGDGRGKIHDNQGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 90

HSP 2 Score: 58.5362 bits (140), Expect = 6.341e-27
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L S G T DEIDFEFLGN+SG PY LHTN++ +G G++
Sbjct:   90 LKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDK 127
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.245e-27
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F+++++ +W     K  NGG    L LDR SG+GFQSK+ YLFG   M+++LV GDSAG VTA+Y+
Sbjct:   31 VPFWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYL 98

HSP 2 Score: 62.003 bits (149), Expect = 8.245e-27
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSS    HDEIDFEFLGN +GQPYIL TN+F  GKGNR
Sbjct:   98 LSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNR 135
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.819e-26
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F+++++ +W     K  +GG  + L LDR SG+GFQSK+ YLFG   M+LKLV GDSAG VTA+Y+
Sbjct:   30 VPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYL 97

HSP 2 Score: 60.077 bits (144), Expect = 1.819e-26
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSS    HDEIDFEFLGN +GQPYIL TN+F  GKG+R
Sbjct:   97 LSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDR 134
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.820e-26
Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  129 AFYQDFDLTWGDKRAKIFN-GGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            +F++D  + WGD R KI +  G+LLSLSLD+ SGSGFQS +++L+G+ ++Q+KLV G+SAGTVT +Y+
Sbjct:   28 SFHKDVQIHWGDGRGKIHDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 95

HSP 2 Score: 58.151 bits (139), Expect = 1.820e-26
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L S G T DEIDFEFLGN+SG PY LHTN++ +G G++
Sbjct:   95 LKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDK 132
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.226e-26
Identity = 36/68 (52.94%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:  129 AFYQDFDLTWGDKRAKIFN-GGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            +F++D  + WGD R K+ +  G+LLSLSLD+ SGSGFQS +++L+G+ ++Q+KLV G+SAGTVT +Y+
Sbjct:   28 SFHKDVQIHWGDGRGKVRDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYL 95

HSP 2 Score: 57.7658 bits (138), Expect = 5.226e-26
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L S G T DEIDFEFLGN+SG PY LHTN++ +G G++
Sbjct:   95 LKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDK 132
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.795e-26
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F +++  TW     K FNGG  + L LD+ +G+GFQSK  YLFG   M +K+V GDSAGTVTA+Y+
Sbjct:   31 VQFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYL 98

HSP 2 Score: 62.003 bits (149), Expect = 6.795e-26
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSSQ   HDEIDFEFLGN +GQPYIL TN+F  GKG+R
Sbjct:   98 LSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDR 135
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.499e-25
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F +++  TW     K  NGG  + L LD+ +G+GFQSK  YLFG   M +K+VAGDSAGTVTA+Y+
Sbjct:   30 VPFGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYL 97

HSP 2 Score: 61.6178 bits (148), Expect = 1.499e-25
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSSQ   HDEIDFEFLGN +GQPYIL TN+F  G GNR
Sbjct:   97 LSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNR 134
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.950e-25
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F +++  TW        NGG+ + LSLD+ +G+GFQ++  YLFG   M +KLV GDSAGTVTA+Y+
Sbjct:   30 VPFDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYL 97

HSP 2 Score: 62.3882 bits (150), Expect = 1.950e-25
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSSQ   HDEIDFEFLGN +GQPYIL TN+F+ GKG+R
Sbjct:   97 LSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDR 134
The following BLAST results are available for this feature:
BLAST of CF510079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
XTH22_ARATH8.046e-3162.12Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH20_ARATH2.874e-2755.88Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH19_ARATH6.341e-2755.88Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC8.245e-2750.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC1.819e-2651.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH1.820e-2654.41Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH5.226e-2652.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN6.795e-2651.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH1.499e-2551.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT1.950e-2548.53Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510079 ID=CF510079; Name=CF510079; organism=Citrus sinensis; type=EST; length=532bp
CAGCTTCTCTCTCTTGTTGTGTTATAACTCATACAGCAAATTAAGAACTA
TGGGTTATCATTATTCTTGTAATGGGTTGTTGTTATTGGTGAGTGTTTTG
ATGGTTGTTGCCTCATCAGCTGTGGGTAGCCTTCTATCAAGACTTTGATT
TAACATGGGGTGATAAGAGAGCTAAGATTTTCAATGGCGGCCAACTTCTT
TCTCTGTCTCTAGACAGAGTTTCTGGCTCTGGTTTTCAGTCCAAGAGAGA
CTACTTATTTGGCAGAATTGATATGCAGCTCAAGCTTGTTGCTGGTGACT
CTGCTGGCACTGTCACTGCCTACTATGTATGCTTTCACACATTATCACCT
CTTTAACTCTCTAAATTTAATTTGCTTGATATTGATCATTCATATTCTTT
TCGCTGATGATGCTGCAGCTGTCTTCGCAAGGGCCGACTCATGATGAGAT
TGATTTTGAGTTCTTGGGAAATGTGAGCGGTCAGCCTTACATTCTTCACA
CAAATATATTCGCTCAGGGTAAAGGCAACCGG
back to top