CF510079

Overview
NameCF510079
Unique NameCF510079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.284e-25
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F +++  TW     K  NGG  + L LD+ +G+GFQSK  YLFG   M +KLV GDSAGTVTA+Y+
Sbjct:   29 VPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYL 96

HSP 2 Score: 59.6918 bits (143), Expect = 7.284e-25
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSS    HDEIDFEFLGN +GQPYIL TN+F  GKG+R
Sbjct:   96 LSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDR 133
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.284e-25
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAY 323
            V F +++  TW     K FNGG  + L LD+ +G+GFQ+K  YLFG   M +K+V GDSAGTVTA+
Sbjct:   30 VPFGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAF 95

HSP 2 Score: 62.003 bits (149), Expect = 7.284e-25
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSSQ   HDEIDFEFLGN +GQPYIL TN+F  GKG+R
Sbjct:   97 LSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDR 134
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.606e-24
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSS G THDEIDFEFLGN +GQPY +HTN++AQGKGNR
Sbjct:   92 LSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNR 129

HSP 2 Score: 60.077 bits (144), Expect = 4.606e-24
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  132 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            F ++F +TWG  +  +F  G  L L LD+ +GS  +SK  +LFG ++M +KLV G+SAGTV AYY+
Sbjct:   29 FSKNFIVTWG--KDHMFMNGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYL 92
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.992e-24
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F +++  TW     K FNGG  L L LD+ +G+GFQSK  YLFG   M +KL AGD+AG VTA+Y+
Sbjct:   33 VPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYL 100

HSP 2 Score: 57.7658 bits (138), Expect = 5.992e-24
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSS    HDEIDFEFLGN +GQP IL TN+F  GKGNR
Sbjct:  100 LSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNR 137
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.993e-24
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  132 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            F  DF + W D      +GG+ + L LD  SG GF SK+ YLFGR+ M++KL+ GDSAGTVTA+Y+
Sbjct:   34 FEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYM 99

HSP 2 Score: 53.1434 bits (126), Expect = 5.993e-24
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 2 
Query:  422 SSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            S      DE+DFEFLGN SGQPY + TN+FA GKG+R
Sbjct:  101 SDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDR 137
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.236e-23
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 3 
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F +++  TW     K  NGG  L L LD+ +G+GFQSK  YLFG   M +KL AGD+AG VTA+Y+
Sbjct:   32 VPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYL 99

HSP 2 Score: 58.151 bits (139), Expect = 2.236e-23
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            LSS    HDEIDFEFLGN +GQP IL TN+F  GKGNR
Sbjct:   99 LSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNR 136
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.910e-23
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  132 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            F +DF   W +   +    G+ + L LD+ +G GF SKR YLFGR+ M++KL+ GDSAGTVTA+Y+
Sbjct:   35 FVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYM 100

HSP 2 Score: 53.5286 bits (127), Expect = 2.910e-23
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 2 
Query:  422 SSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            S      DE+DFEFLGN SGQPY + TNIFA GKG+R
Sbjct:  102 SDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDR 138
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.411e-23
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  129 AFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYVC 332
            +F  +F++ W +      + G++ +LSLD  +G GFQ+K  Y FG   M+LKLV GDSAG VTAYY+C
Sbjct:   24 SFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMC 91

HSP 2 Score: 56.225 bits (134), Expect = 6.411e-23
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 2 
Query:  410 MLQLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            M   +  GP  DEIDFEFLGN +GQPYI+ TN++  G GNR
Sbjct:   90 MCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNR 130
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.412e-22
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:  132 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            F +DF +TW        N G+  +L LD+ SG+ F S + +LFG+IDM++KL+ G S GTV AYY+
Sbjct:   37 FNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYM 102

HSP 2 Score: 60.077 bits (144), Expect = 1.412e-22
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            +SS  P  DEIDFEFLGNV+GQPYIL TN++A+G  NR
Sbjct:  102 MSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNR 139
[Close]
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 2.391e-22
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:  183 NGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            N G++  L LD  SG+GF+S+  YLFG++ +Q+KLV GDSAGTVTA+Y+
Sbjct:   44 NEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYM 92

HSP 2 Score: 59.6918 bits (143), Expect = 2.391e-22
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            +SS GP H+E DFEFLGN +G+PYI+ TNI+  G GNR
Sbjct:   92 MSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNR 129
The following BLAST results are available for this feature:
BLAST of CF510079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
XTHA_PHAAN7.284e-2551.47Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHB_PHAAN7.284e-2550.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH4.606e-2478.95Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH5.992e-2451.47Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH7_ARATH5.993e-2451.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB2.236e-2350.00Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH6_ARATH2.910e-2348.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH6.411e-2347.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH1.412e-2245.45Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH2.391e-2257.14Xyloglucan endotransglucosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510079 ID=CF510079; Name=CF510079; organism=Citrus sinensis; type=EST; length=532bp
CAGCTTCTCTCTCTTGTTGTGTTATAACTCATACAGCAAATTAAGAACTA
TGGGTTATCATTATTCTTGTAATGGGTTGTTGTTATTGGTGAGTGTTTTG
ATGGTTGTTGCCTCATCAGCTGTGGGTAGCCTTCTATCAAGACTTTGATT
TAACATGGGGTGATAAGAGAGCTAAGATTTTCAATGGCGGCCAACTTCTT
TCTCTGTCTCTAGACAGAGTTTCTGGCTCTGGTTTTCAGTCCAAGAGAGA
CTACTTATTTGGCAGAATTGATATGCAGCTCAAGCTTGTTGCTGGTGACT
CTGCTGGCACTGTCACTGCCTACTATGTATGCTTTCACACATTATCACCT
CTTTAACTCTCTAAATTTAATTTGCTTGATATTGATCATTCATATTCTTT
TCGCTGATGATGCTGCAGCTGTCTTCGCAAGGGCCGACTCATGATGAGAT
TGATTTTGAGTTCTTGGGAAATGTGAGCGGTCAGCCTTACATTCTTCACA
CAAATATATTCGCTCAGGGTAAAGGCAACCGG
back to top