CF510079

Overview
NameCF510079
Unique NameCF510079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.094e-20
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  132 FYQDFDLTWGDKRAKIFNGG---QLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            FY+ FD+       ++ +     Q ++L+LDR SGSGF SK  YLFG   +Q+KLV G+SAGTVT++Y+
Sbjct:   28 FYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYL 96          

HSP 2 Score: 53.1434 bits (126), Expect = 2.094e-20
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 2
Query:  422 SSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            S +G  HDEID EF+GN+SG PY+++TN++A G G +
Sbjct:   98 SGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKK 134          
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.079e-18
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  123 WVAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            +V F Q++ +TWG       + G+ + L +D+ SG GF+SK  Y  G  +M++K+ +G++ G VTA+Y+
Sbjct:   32 FVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYL 100          

HSP 2 Score: 54.6842 bits (130), Expect = 1.079e-18
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L+S+G  HDEIDFEFLGN +G+P  L TN+F  G+GNR
Sbjct:  100 LTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNR 137          
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.824e-18
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 3
Query:  141 DFDL----TWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            DFD+    TWG       N G+ + LS+D  SGSGF+SK  Y  G   M++KL   DSAG VTA+Y+
Sbjct:   31 DFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYL 97          

HSP 2 Score: 55.0694 bits (131), Expect = 1.824e-18
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 2
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L+S+G THDE+DFEFLGN  G+P  + TN+F+ G+G R
Sbjct:   97 LTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGR 134          
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 3.274e-17
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 3
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            V F  ++ +TWG       N G+ + LSLD  SGSGF+SK  Y  G   +++K+   D++G VTA+Y+
Sbjct:   37 VGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYL 104          

HSP 2 Score: 50.8322 bits (120), Expect = 3.274e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 2
Query:  419 LSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            L+S+G THDE+DFEFLGN  G+   + TN+F  GKGNR
Sbjct:  104 LTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNR 140          
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 4.483e-11
Identity = 24/68 (35.29%), Postives = 37/68 (54.41%), Query Frame = 3
Query:  126 VAFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            + F + +   +GD+   +   G+ + L+LD  +GSGF S   YL G     +KL A  SAG V A+Y+
Sbjct:   29 IQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYL 96          

HSP 2 Score: 41.2022 bits (95), Expect = 4.483e-11
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 2
Query:  440 HDEIDFEFLGNVSGQPYILHTNIFAQG 520
            HDEIDFEFLGN+ G+ + + TNI+  G
Sbjct:  106 HDEIDFEFLGNIRGREWRIQTNIYGNG 132          
BLAST of CF510079 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 4.501e-11
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 2
Query:  440 HDEIDFEFLGNVSGQPYILHTNIFAQGKGNR 532
            HDE+D EFLG   G+PY L TN+F +G G+R
Sbjct:  112 HDEVDIEFLGTTPGKPYSLQTNVFVRGSGDR 142          

HSP 2 Score: 39.6614 bits (91), Expect = 4.501e-11
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 3
Query:  132 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYV 329
            F ++F   WG +  +      +++L LD+ +GSGF+S R Y  G     +KL  G +AG  T+ Y+
Sbjct:   39 FDREFRTLWGSQHQR--REQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYL 102          
The following BLAST results are available for this feature:
BLAST of CF510079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
XTH8_ORYSJ2.094e-2046.38Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH3_ARATH1.079e-1836.23Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH1.824e-1846.27Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH3.274e-1739.71Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH4.483e-1135.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH4.501e-1158.06Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510079 ID=CF510079; Name=CF510079; organism=Citrus sinensis; type=EST; length=532bp
CAGCTTCTCTCTCTTGTTGTGTTATAACTCATACAGCAAATTAAGAACTA
TGGGTTATCATTATTCTTGTAATGGGTTGTTGTTATTGGTGAGTGTTTTG
ATGGTTGTTGCCTCATCAGCTGTGGGTAGCCTTCTATCAAGACTTTGATT
TAACATGGGGTGATAAGAGAGCTAAGATTTTCAATGGCGGCCAACTTCTT
TCTCTGTCTCTAGACAGAGTTTCTGGCTCTGGTTTTCAGTCCAAGAGAGA
CTACTTATTTGGCAGAATTGATATGCAGCTCAAGCTTGTTGCTGGTGACT
CTGCTGGCACTGTCACTGCCTACTATGTATGCTTTCACACATTATCACCT
CTTTAACTCTCTAAATTTAATTTGCTTGATATTGATCATTCATATTCTTT
TCGCTGATGATGCTGCAGCTGTCTTCGCAAGGGCCGACTCATGATGAGAT
TGATTTTGAGTTCTTGGGAAATGTGAGCGGTCAGCCTTACATTCTTCACA
CAAATATATTCGCTCAGGGTAAAGGCAACCGG
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