CF510164

Overview
NameCF510164
Unique NameCF510164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.589e-14
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            ++NR+Q A + LG         ++   LP +AV+GGQS+GKSSVLE+ VG+DFLPRGSGIVTRRPL+L
Sbjct:   14 VINRVQDAFSQLGT--------SVSFELPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLIL 73          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            ++N++Q     LG    D         LP + V+G QSSGKSSVLE+IVGRDFLPRGSGIVTRRPL+L
Sbjct:    7 VINKLQDVFNTLGSDPLD---------LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLIL 65          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  121 LGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            L D   DS + TL   LP +AV+G QSSGKSS+LE++VGRDFLPRG+GIVTRRPLVL
Sbjct:   14 LQDVMYDSGIDTL--DLPILAVVGSQSSGKSSILETLVGRDFLPRGTGIVTRRPLVL 68          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.385e-12
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            ++N++Q    ++G              LP + V+G QSSGKSSVLE++VGRDFLPRGSG+VTRRPLVL
Sbjct:  140 IINKLQENAALIGSE----------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVL 197          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.085e-12
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  169 LPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LP +AV+G QSSGKSSVLES+VGRD LPRG+GIVTRRPL+L
Sbjct:   25 LPQIAVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLIL 65          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  169 LPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LPS+ V+G QS GKSSVLE+IVG+DFLPRG+GIVTRRPL+L
Sbjct:   26 LPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLIL 66          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            +VN++Q    +    G  S +     ALP V V+G QSSGKSSVLE++VGRDFLPRG+ I TRRPLVL
Sbjct:   40 IVNKLQ---DIFAQLGSQSTI-----ALPQVVVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVL 99          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.261e-12
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            +VN++Q A + +G       +  L + LP + V+  QSSGKSSVLE+IVGRDFLPRG+GIVTRRPLVL
Sbjct:    8 VVNQLQEAFSTVG-------VQNLID-LPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVL 67          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   88 LVNRIQRACTVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            +VN++Q    +    G  S +     ALP VAV+G QSSGKSSVLE++VGRDFLPRG+ I TRRPL L
Sbjct:   24 IVNKLQ---DIFAQLGSQSTI-----ALPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLRL 83          
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  169 LPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LP + V+G QSSGKSSVLES+VGRD LPRG+GIVTRRPL+L
Sbjct:   25 LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLIL 65          
The following BLAST results are available for this feature:
BLAST of CF510164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DYN1_CAEEL9.589e-1457.35Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DYNA_DICDI3.644e-1357.35Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DNM1_YEAST4.759e-1368.42Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
DYNB_DICDI1.385e-1252.94Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
DNM1L_DANRE3.085e-1280.49Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
YB68_SCHPO4.029e-1278.05Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DRP3A_ARATH4.029e-1255.88Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
VPS1_SCHPO5.261e-1257.35Vacuolar protein sorting-associated protein 1 OS=S... [more]
DRP3B_ARATH8.975e-1255.88Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DNM1L_HUMAN8.975e-1278.05Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-679 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510164 ID=CF510164; Name=CF510164; organism=Citrus sinensis; type=EST; length=291bp
TCAGTTCAAATTCGAAAGAACAAACCGGTAGCCTTTTGGAAGAAAGAGAA
ATTGAAATAATGGCAACAATGGAGAGCTTGATATGGGTTAGTTAACAGGA
TACAGAGAGCGTGTACAGTACTCGGCGACTACGGCGGTGACTCTGCTTTG
CCTACACTTTGGGAGGCTCTTCCCTCTGTTGCCGTTATCGGTGGCCAGAG
TTCTGGAAAGTCGTCGGTGCTGGAGAGCATTGTCGGACGAGATTTTCTTC
CTCGAGGATCAGGTATTGTGACAAGGAGGCCTTTGGTGCTG
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