CF510164

Overview
NameCF510164
Unique NameCF510164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  169 LPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LP + V+G QSSGKSSVLES+VGRD LPRG+GIVTRRPL+L
Sbjct:   25 LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLIL 65
[Close]
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  169 LPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LP + V+G QSSGKSSVLES+VGRD LPRG+G+VTRRPL+L
Sbjct:   25 LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLIL 65
[Close]
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  169 LPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            LP + V+G QSSGKSSVLES+VGRD LPRG+G+VTRRPL+L
Sbjct:   25 LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLIL 65
[Close]
BLAST of CF510164 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.611e-11
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:  115 TVLGDYGGDSALPTLWEALPSVAVIGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVL 291
            T+L      SA  TL    PS+ VIG QSSGKSSVLESIVGR+FLP+GS +VTRRP+ L
Sbjct:  196 TILNKVDSSSAHLTL----PSIVVIGSQSSGKSSVLESIVGREFLPKGSNMVTRRPIEL 250
The following BLAST results are available for this feature:
BLAST of CF510164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DNM1L_BOVIN8.975e-1278.05Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_RAT1.172e-1175.61Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DNM1L_MOUSE1.172e-1175.61Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
MGM1_YEAST2.611e-1162.71Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-679 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-8_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510164 ID=CF510164; Name=CF510164; organism=Citrus sinensis; type=EST; length=291bp
TCAGTTCAAATTCGAAAGAACAAACCGGTAGCCTTTTGGAAGAAAGAGAA
ATTGAAATAATGGCAACAATGGAGAGCTTGATATGGGTTAGTTAACAGGA
TACAGAGAGCGTGTACAGTACTCGGCGACTACGGCGGTGACTCTGCTTTG
CCTACACTTTGGGAGGCTCTTCCCTCTGTTGCCGTTATCGGTGGCCAGAG
TTCTGGAAAGTCGTCGGTGCTGGAGAGCATTGTCGGACGAGATTTTCTTC
CTCGAGGATCAGGTATTGTGACAAGGAGGCCTTTGGTGCTG
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