CF510169

Overview
NameCF510169
Unique NameCF510169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length230
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510169 vs. ExPASy Swiss-Prot
Match: NACB_EMENI (Nascent polypeptide-associated complex subunit beta OS=Emericella nidulans GN=egd1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   56 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVN 229
            M+  KL +M  +VR GGKG+ RRK K VHKT+  DDK+LQ+TLK++ V  I AIEEVN
Sbjct:    1 MDQAKLARMQASVRIGGKGTPRRKVKKVHKTSGADDKKLQATLKKMNVQPIQAIEEVN 58          
BLAST of CF510169 vs. ExPASy Swiss-Prot
Match: BTF3_CAEEL (Transcription factor BTF3 homolog OS=Caenorhabditis elegans GN=icd-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.527e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   62 VEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVN 229
            ++KL      VR GGKG+ RRKKK +HKT   DDK+LQS LK++ V  IP IEEVN
Sbjct:   10 IKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVN 65          
BLAST of CF510169 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   56 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVN 229
            M+  KL +M  +VR GGKG+ RRK K VHK++ TDDK+LQ+ LK++ V  I AIEEVN
Sbjct:    1 MDQAKLARMQASVRIGGKGTPRRKVKKVHKSSGTDDKKLQTALKKLNVQPIQAIEEVN 58          
BLAST of CF510169 vs. ExPASy Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.804e-11
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2
Query:   56 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVN 229
            M+  KL +M  +VR GGKG+ RRK K VHK++  DDK+LQ+TLK++ V  I AIEEVN
Sbjct:    1 MDQAKLARMQQSVRIGGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVN 58          
The following BLAST results are available for this feature:
BLAST of CF510169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NACB_EMENI1.169e-1158.62Nascent polypeptide-associated complex subunit bet... [more]
BTF3_CAEEL1.527e-1157.14Transcription factor BTF3 homolog OS=Caenorhabditi... [more]
NACB_PHANO2.605e-1156.90Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPNC5.804e-1156.90Nascent polypeptide-associated complex subunit bet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-684 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510169 ID=CF510169; Name=CF510169; organism=Citrus sinensis; type=EST; length=230bp
CTTATCTTCCTCTTCACCAAATTCTTTGTCCCCACACAAAAACCCTAGCT
CCAAGATGAATGTGGAGAAGCTAATGAAGATGGCCGGTGCAGTTCGCACC
GGTGGTAAGGGTAGTGTGAGAAGAAAGAAGAAGGCTGTTCATAAGACAAC
AACCACCGATGACAAGAGGCTTCAGAGCACCTTGAAGAGAATAGGAGTGA
ATGCTATTCCTGCAATTGAGGAAGTTAACA
back to top