CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.858e-33
Identity = 68/97 (70.10%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD  WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VG SAG ++W ARYILERITEIAGV
Sbjct:  134 LLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.427e-33
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VG SAG ++WVARYILERITE+AG+
Sbjct:  134 LLQKDLSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGI 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.427e-33
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV+WP+                   A+KA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VG SA  +LWVARYILERITEIAGV
Sbjct:  134 LLQKDVQWPVGWPLGGFPGPQGPYYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.427e-33
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VG SAG ++W ARYILERITEIAGV
Sbjct:  134 LLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.427e-33
Identity = 68/97 (70.10%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV+WPL                   A+KA+GRDIVDSHYKAC+YAGINISGINGEVMPGQWEFQVGP++G SA  +LWVARYILERITEIAGV
Sbjct:  134 LLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGPSIGISAADELWVARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP+VG SAG +LWVARYILERITEIAGV
Sbjct:  134 LLQKDIHWPIGWPLGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSVGISAGDELWVARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADK++GRDIVDSHYKACL+ G+NISGINGEVMPGQWEFQVGP VG SAG Q+WVARYILERITEIAGV
Sbjct:  134 LLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGPTVGISAGDQVWVARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-33
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQK+V WP+                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VG SAG ++WVARYILERITEIAGV
Sbjct:  134 LLQKEVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGV 230
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.140e-33
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP+VG SA  +LW AR+I+ERITE AGV
Sbjct:  135 LLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGV 231
[Close]
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.140e-33
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 3 
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP++G SAG +LWVARYILERITEIAGV
Sbjct:  134 LLQKDIHWPIGMALGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAGDELWVARYILERITEIAGV 230
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA3_MEDSA1.858e-3370.10Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA5_MAIZE2.427e-3368.04Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA3_PHAVU2.427e-3371.13Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA3_PEA2.427e-3369.07Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA2_SOYBN2.427e-3370.10Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA_LUPLU3.170e-3370.10Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA3_HORVU3.170e-3369.07Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLNA1_LOTJA3.170e-3369.07Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_PINSY4.140e-3369.07Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_LUPAN4.140e-3369.07Glutamine synthetase nodule isozyme (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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