CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.407e-33
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VG SAG ++W ARYILERITEI+GV
Sbjct:  134 LLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEISGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.407e-33
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+ WPL                   ADKA+GRD+V++HYKACL+AGINISGINGEVMPGQWEFQVGP+VG SAG ++WVARYILERITE+AGV
Sbjct:  133 LLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGV 229          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VG S+G Q+WVARYILERITEIAGV
Sbjct:  134 LLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VG S+G Q+WVARYILERITEIAGV
Sbjct:  134 LLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.062e-33
Identity = 66/97 (68.04%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD+KWP+                   ADKA+GRDIVDSHYKACLYAGIN+SG NGEVMPGQWEFQVGP VG +A  Q+WVARYILERITE+AGV
Sbjct:  134 LLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERITELAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.223e-33
Identity = 66/96 (68.75%), Postives = 73/96 (76.04%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAG 290
            LLQKDV WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VG SAG ++W ARYILERITE+AG
Sbjct:  134 LLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITELAG 229          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.573e-32
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV WPL                   A+KA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VG +A  Q+WVARYILER+TE+AGV
Sbjct:  134 LLQKDVNWPLGWPVGGFPGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 66/97 (68.04%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD  WPL                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VG +A  Q+WVARYILERITEI GV
Sbjct:  134 LLQKDTNWPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIAAADQIWVARYILERITEIYGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.505e-32
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ+D+ WPL                   ADKA+GRDIVDSHYKA LYAGINISGINGEVMPGQWEFQVGP+VG SAG ++WVARYILERI EIAGV
Sbjct:  134 LLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERIAEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.505e-32
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LL+K+V  P+                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVG SAG +LWVARYILERITEIAGV
Sbjct:  133 LLKKEVNCPIGCPTGGYPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGV 229          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA4_PEA5.407e-3368.04Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA1_PEA5.407e-3367.01Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA4_MAIZE7.062e-3369.07Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA3_MAIZE7.062e-3369.07Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLN14_ARATH7.062e-3368.04Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA2_PHAVU9.223e-3368.75Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLN12_ORYSJ1.573e-3267.01Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA_LACSA2.683e-3268.04Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA_NICPL3.505e-3269.07Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA1_DAUCA3.505e-3270.10Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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