CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.978e-32
Identity = 66/97 (68.04%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV WPL                   ADK++GRDIVD+HYKA LYAGINISGINGEVMPGQWEFQVGP+VG SA  ++W+ARYILERITEIAGV
Sbjct:  134 LLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERITEIAGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.967e-31
Identity = 64/97 (65.98%), Postives = 71/97 (73.20%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQK + WPL                   ADK++GRDIVD+HYKACL+AGINISGIN EVMPGQWEFQ+GP VG SAG  +WVARYILERITEIAGV
Sbjct:  136 LLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGV 232          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.875e-31
Identity = 64/97 (65.98%), Postives = 71/97 (73.20%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            L+QKDV WP+                   ADKA GRDIVD+HYKACLYAGI ISGINGEVMPGQWEFQVGP  G S+G Q+WVARY+LERITEI+GV
Sbjct:  134 LMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.061e-31
Identity = 69/97 (71.13%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKD KWPL                   ADK++GRDIVD  YKACLYAGI+ISGINGEVMPGQWEFQV PAVG SAG QLWVARYILERITEIAGV
Sbjct:  134 LLQKDTKWPLGWPLAYPGPQGPYYCAAG-ADKSYGRDIVDCAYKACLYAGIDISGINGEVMPGQWEFQVAPAVGVSAGDQLWVARYILERITEIAGV 229          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.610e-31
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LL+KDVKWPL                   ADKA+GRDIVD+HYKACLY+G++I G NGEVMPGQWEFQ+ P VG  AG QLWVARYILERITEI GV
Sbjct:  134 LLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAGDQLWVARYILERITEICGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.127e-30
Identity = 63/97 (64.95%), Postives = 69/97 (71.13%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ++VKWPL                   ADK WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VG  AG  +W ARY+LERITE AGV
Sbjct:  192 LLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGV 288          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.512e-30
Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQKDV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VG  AG  +W++RYILERITE AGV
Sbjct:  185 LLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGV 281          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.308e-30
Identity = 62/97 (63.92%), Postives = 69/97 (71.13%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ DVKWPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VG  AG  +W +RYILERITE AGV
Sbjct:  190 LLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGV 286          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.247e-29
Identity = 61/97 (62.89%), Postives = 68/97 (70.10%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ +V WPL                   A+K+WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VG  AG  +W ARY+LERITE AGV
Sbjct:  190 LLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGV 286          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.247e-29
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ+DV WPL                   +DK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VG  AG  +W++RYILERITE AGV
Sbjct:  190 LLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGV 286          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLN12_ARATH5.978e-3268.04Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLN13_ORYSJ2.967e-3165.98Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLN13_ARATH3.875e-3165.98Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA2_MAIZE5.061e-3171.13Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLN15_ARATH6.610e-3164.95Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA2_ARATH1.127e-3064.95Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNAC_MAIZE2.512e-3063.92Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_MEDSA7.308e-3063.92Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA1.247e-2962.89Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_ORYSJ1.247e-2961.86Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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