CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.247e-29
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            L+Q+DV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VG  AG  +W ARY+LERITE AGV
Sbjct:  194 LMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGV 290          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.737e-29
Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ +VKWPL                   ADK++GRDI D+HYKAC+YAGINISG NGEVMPGQWE+QVGP+VG  AG  +W +RYILERITE AGV
Sbjct:  192 LLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGV 288          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.351e-28
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            L+Q+DV WPL                   +DK++GRDI D+HYKACLYAGI ISG NGEVMPGQWE+QVGP+VG  AG  +W +RYILERITE AGV
Sbjct:  196 LMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGV 292          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.070e-28
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LLQ +V WPL                   ADK++GRDI D+HYKACL+AGINISG NGEVMPGQWE+QVGP+VG  AG  +W +RYILERITE AGV
Sbjct:  191 LLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGV 287          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.608e-22
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            A K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  G S G QLW+ARY L R+ E  GV
Sbjct:  164 AGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDQLWMARYFLHRVAEEFGV 231          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  G S G  LWVAR+IL R+ E  GV
Sbjct:  168 ADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGV 235          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            AD+A+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  G S G  LWVAR+IL R+ E  GV
Sbjct:  167 ADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_CANFA (Glutamine synthetase OS=Canis familiaris GN=GLUL PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.249e-21
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  G   G  LWVAR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.632e-21
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAGI I+G N EVMP QWEFQ+GP  G   G  LWVAR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.632e-21
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  G   G  LWVAR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGV 234          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA2_DAUCA1.247e-2962.89Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_PEA4.737e-2961.86Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_HORVU2.351e-2859.79Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA4_PHAVU3.070e-2860.82Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_CANGA5.608e-2266.18Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_MACFA1.249e-2164.71Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_HUMAN1.249e-2164.71Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_CANFA1.249e-2166.18Glutamine synthetase OS=Canis familiaris GN=GLUL P... [more]
GLNA_RAT1.632e-2166.18Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_PIG1.632e-2166.18Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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