CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 1.632e-21
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAGI I G N EVMP QWEFQ+GP  G   G  LWVAR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.131e-21
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAG+ I G N EVMP QWEFQVGP  G   G  LW+AR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGPCEGIEMGDHLWIARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.131e-21
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  G   G  LWVAR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWVARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.783e-21
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADK +GRD+V+SHYKACLYAGI I G N EVMP QWEFQVGP  G   G  LW+AR+IL R+ E  GV
Sbjct:  167 ADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDMGDHLWMARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 100.523 bits (249), Expect = 2.783e-21
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  G   G  LW+AR+IL R+ E  GV
Sbjct:  167 ADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGV 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.201e-21
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            A K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  G +   QLW+ARY L R+ E  GV
Sbjct:  166 AGKVFARDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGV 233          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.098e-21
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            A K + RD+V++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  G + G +LWV RY+L R+ E  GV
Sbjct:  163 AGKVYARDVVEAHYRACLYAGLRISGINAEVMPSQWEFQVGPCTGITMGDELWVGRYLLHRVAEEFGV 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.098e-21
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 3
Query:   96 KAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  G S G  LW+ARY+L RI E  GV
Sbjct:  164 KVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGV 229          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.098e-21
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            A+K + RDIVD+HY+ACLYAGI +SG N EVMP QWEFQVGP  G S G  LW+AR++L RI+E  G+
Sbjct:  173 ANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGI 240          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.058e-20
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 3
Query:   96 KAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            + + RDIV++HYKACLYAGINISGIN EVMP QWE+QVGP  G   G QLW++R++L RI E  GV
Sbjct:  170 RVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGV 235          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA_BOVIN1.632e-2166.18Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]
GLNA_CHICK2.131e-2164.71Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_ACOCA2.131e-2164.71Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_XENLA2.783e-2166.18Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_MOUSE2.783e-2163.24Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_KLULA6.201e-2161.76Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_ASHGO8.098e-2161.76Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_AGABI8.098e-2166.67Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA2_DROME8.098e-2163.24Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_SCHPO1.058e-2065.15Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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