CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  108 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAG 290
            RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP +G   G QLWV+R+ L RITE  G
Sbjct:  172 RDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCLGIEMGDQLWVSRFFLARITEEFG 232          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITE 281
            A++ +GRD+V++HY+ACL AGINISG N +VMP QWEFQVGP  G + G  LW+ARY+L R+ E
Sbjct:  164 ANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAE 227          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            A K + RD +++HY+ACLYAGI ISGIN EVMP QWEFQVGP  G   G  LW+AR++L RI E  G+
Sbjct:  165 AGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMGDHLWMARFLLLRIGEEWGI 232          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.444e-19
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  108 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAG 290
            RDIVD+HYKACLY+G+ ISG N EVMP QWEFQVGP VG   G  LW+AR++L RI E  G
Sbjct:  172 RDIVDAHYKACLYSGVKISGTNAEVMPAQWEFQVGPCVGIEMGDHLWLARFLLARIAEEFG 232          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.580e-19
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   96 KAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            K + RDIV++HY+ACLYAG+ ISGIN EVMP QWE+QVGP  G   G  LW++R++L R+ E  GV
Sbjct:  154 KVYCRDIVEAHYRACLYAGVKISGINAEVMPSQWEYQVGPCHGIEMGDHLWISRFLLHRVAEEFGV 219          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  108 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAG 290
            RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP  G + G QLW++R+ L R+ E  G
Sbjct:  170 RDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMGDQLWISRFFLHRVAEEFG 230          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.913e-18
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 3
Query:    3 LLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            LL    KWPL                   A  A GRD+ + HY+ CL AG+NISG+N EV+P QWE+QVGP  G + G  +W++RYI+ R+ E+  V
Sbjct:  161 LLNAITKWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGPCEGITMGDHMWMSRYIMYRVCEMFNV 257          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  108 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAG 290
            RDIV++HYK CLYAG+ ISG N EVMP QWEFQVGP  G   G  LW+AR++L R++E  G
Sbjct:  174 RDIVEAHYKCCLYAGVKISGTNAEVMPAQWEFQVGPCDGIEMGDHLWLARFLLHRVSEEFG 234          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.430e-17
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            AD+ + RD+V++H  ACLYAGI+ +G N EVMP QWEFQ+GPA G  A   LWV+RYIL+RI E  GV
Sbjct:  204 ADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKACDDLWVSRYILQRIAEEYGV 270          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 5.432e-17
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            ADKA+ RDI+++HY+ACLYAG+ I+G   EV   QWEFQ+GP  G   G  LWVAR+IL R+ +  GV
Sbjct:  167 ADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMGDHLWVARFILHRVCKDFGV 234          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA_FUSSH2.605e-1968.85Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_PANAR4.444e-1960.94Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_CRYNE4.444e-1960.29Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_COLGL4.444e-1967.21Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_EMENI7.580e-1959.09Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_GIBFU1.293e-1863.93Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA1_CHLRE4.913e-1842.27Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_NEUCR8.381e-1862.30Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA1_DROME1.430e-1760.29Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_CRIGR5.432e-1755.88Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
back to top