CF510175

Overview
NameCF510175
Unique NameCF510175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:560..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITE 281
            +  A+GR I D H +ACLYAGI ISG N EV PGQ EFQ+GP  G  A  QLW+AR+ILE+I+E
Sbjct:  161 SQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISE 224          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITE 281
            AD+ +GRD+V++H   CL AG+ ISGIN EVMPGQWEFQVGP         LWVAR++L R  E
Sbjct:  145 ADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAE 208          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            AD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG          +WVAR++L R+ E  GV
Sbjct:  142 ADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGV 209          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   90 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            A+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP    + G ++ ++R++L R+ E  G+
Sbjct:  188 AESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGI 255          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.085e-12
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  105 GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G     + G Q+W+ R++L RI E  GV
Sbjct:  145 GRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGV 207          
BLAST of CF510175 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.872e-12
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  108 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGFSAGAQLWVARYILERITEIAGV 293
            R+IV+ H   CL AGIN  GIN EV  GQWEFQ+       A  Q+W+ARY+L+R+TE  G+
Sbjct:  146 REIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGI 207          
The following BLAST results are available for this feature:
BLAST of CF510175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA_MIMIV2.064e-1660.94Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA2_STRVR1.338e-1557.81Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY5.084e-1552.94Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_CHLRE1.636e-1345.59Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_FRAAL3.085e-1252.38Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_RHILP6.872e-1251.61Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-690 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510175 ID=CF510175; Name=CF510175; organism=Citrus sinensis; type=EST; length=293bp
CCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGT
TATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGC
TTGGGGGCGTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAG
GAATCAACATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAG
TTCCAAGTTGGTCCCGCTGTTGGATTTTCTGCTGGAGCTCAGTTGTGGGT
TGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAGTT
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