CF510178

Overview
NameCF510178
Unique NameCF510178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig955 contig Csv1_Contig955:1..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_MOUSE (DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQ+ HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YAR +  +HQ  LL   +A M E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_CRIGR (DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQ+ HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YAR +  +HQ  LL   +A M E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_CANFA (DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQ+ HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YAR +  +HQ  LL   +A M E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_BOVIN (DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35
Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GKTQ+ HTL V  QLP +  GG GK  YIDTEGTFRP+R++ +AER+G+    VLDN+ YAR +  +HQ  LL   +A M E  + LLIVDS  AL+R D++GRGEL+ RQ  L +
Sbjct:  120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_DROME (DNA repair protein Rad51 homolog OS=Drosophila melanogaster GN=spn-A PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.454e-32
Identity = 67/127 (52.76%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLG 381
            G+ TE FGEFR GKTQL HTL V  QLP + +GG GK  YIDTE TFRP+R+  IA+R+ ++   VLDN+ + RA+  + Q  L+   A  + E  + LLIVDS +AL+R D+ GRGELA RQ  LG
Sbjct:  117 GSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLG 243          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_CENSY (DNA repair and recombination protein radA OS=Cenarchaeum symbiosum GN=radA PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 70/127 (55.12%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGKTQ  HT+CV TQ P    G  G V YIDTEGTFRP+R+V IA+   MDP  +LD II ARAY   HQ  +L      + EE  +L+I DS   LFR ++ GRG LA RQQKLG+
Sbjct:  108 AITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGR 234          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRCJ (DNA repair and recombination protein radA OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.737e-29
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE  GEF SGKTQL H L V  QLP +  G   K  YIDTE TFRP+RI+ IA+  G+DP   L+NI YARAY+ +HQ  L+    + + +    LL+VDSVIA FR +F GR  LA+RQQKL +
Sbjct:  120 AVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIRQHNVALLVVDSVIAHFRAEFPGRENLAERQQKLNK 246          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRFU (DNA repair and recombination protein radA OS=Pyrococcus furiosus GN=radA PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.963e-29
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGKTQLAHTL V  QLP    G NG V +IDTE TFRP+RI  IA+  G+DP  VL +I  ARA+   HQ  L+     K+ E      P +LLIVDS+ + FR ++ GRG LA+RQQKL +
Sbjct:  132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 263          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRAB (DNA repair and recombination protein radA OS=Pyrococcus abyssi GN=radA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.963e-29
Identity = 70/132 (53.03%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGKTQLAHTL V  QLP    G NG V +IDTE TFRP+RI  IA+  G+DP  VL +I  ARA+   HQ  L+     K+ E     +P +LLIVDS+ + FR ++ GRG LA+RQQKL +
Sbjct:  139 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 270          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_THENV (DNA repair and recombination protein radA OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=radA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ IA+  G+DP   L+NI YARAY+ +HQ  L+    + + +    LL+VDSVIA FR +F GR  LA+RQQKL +
Sbjct:  118 AVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNVALLVVDSVIAHFRSEFPGRENLAERQQKLNK 244          
The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RAD51_MOUSE4.359e-3554.69DNA repair protein RAD51 homolog 1 OS=Mus musculus... [more]
RAD51_CRIGR4.359e-3554.69DNA repair protein RAD51 homolog 1 OS=Cricetulus g... [more]
RAD51_CANFA4.359e-3554.69DNA repair protein RAD51 homolog 1 OS=Canis famili... [more]
RAD51_BOVIN4.359e-3554.69DNA repair protein RAD51 homolog 1 OS=Bos taurus G... [more]
RAD51_DROME3.454e-3252.76DNA repair protein Rad51 homolog OS=Drosophila mel... [more]
RADA_CENSY1.005e-3155.12DNA repair and recombination protein radA OS=Cenar... [more]
RADA_PYRCJ2.737e-2952.76DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_PYRFU7.963e-2953.03DNA repair and recombination protein radA OS=Pyroc... [more]
RADA_PYRAB7.963e-2953.03DNA repair and recombination protein radA OS=Pyroc... [more]
RADA_THENV1.040e-2852.76DNA repair and recombination protein radA OS=Therm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-693 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bp
GGAGCCACCACAGAAGCTTTTGGGGAGTTCCGGTCTGGGAAAACACAGCT
TGCTCATACCCTATGCGTTTGCACGCAGCTTCCTACAAATATGCGGGGTG
GGAATGGGAAGGTTGCTTACATTGACACTGAAGGAACTTTCCGCCCTGAT
AGGATTGTACCCATAGCTGAAAGATTTGGAATGGACCCAGGAGCTGTCCT
TGACAATATCATTTATGCTCGTGCGTACACATATGAGCATCAGTACAACC
TACTTCTTGGTCTGGCAGCAAAAATGTCTGAAGAACCATTCAGACTTCTG
ATTGTGGATTCAGTGATTGCCCTCTTTCGAGTAGATTTCACAGGAAGAGG
AGAACTTGCAGATCGACAGCAAAAATTGGGACAAATGCT
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