CF510178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_MOUSE (DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35 Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1 Query: 1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 G+ TE FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+ VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ L + Sbjct: 120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_CRIGR (DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35 Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1 Query: 1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 G+ TE FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+ VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ L + Sbjct: 120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_CANFA (DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35 Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1 Query: 1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 G+ TE FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+ VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ L + Sbjct: 120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_BOVIN (DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.359e-35 Identity = 70/128 (54.69%), Postives = 90/128 (70.31%), Query Frame = 1 Query: 1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 G+ TE FGEFR+GKTQ+ HTL V QLP + GG GK YIDTEGTFRP+R++ +AER+G+ VLDN+ YAR + +HQ LL +A M E + LLIVDS AL+R D++GRGEL+ RQ L + Sbjct: 120 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLAR 247
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_DROME (DNA repair protein Rad51 homolog OS=Drosophila melanogaster GN=spn-A PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.454e-32 Identity = 67/127 (52.76%), Postives = 86/127 (67.72%), Query Frame = 1 Query: 1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLG 381 G+ TE FGEFR GKTQL HTL V QLP + +GG GK YIDTE TFRP+R+ IA+R+ ++ VLDN+ + RA+ + Q L+ A + E + LLIVDS +AL+R D+ GRGELA RQ LG Sbjct: 117 GSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLG 243
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_CENSY (DNA repair and recombination protein radA OS=Cenarchaeum symbiosum GN=radA PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31 Identity = 70/127 (55.12%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGKTQ HT+CV TQ P G G V YIDTEGTFRP+R+V IA+ MDP +LD II ARAY HQ +L + EE +L+I DS LFR ++ GRG LA RQQKLG+ Sbjct: 108 AITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVARAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGR 234
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRCJ (DNA repair and recombination protein radA OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.737e-29 Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE GEF SGKTQL H L V QLP + G K YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + LL+VDSVIA FR +F GR LA+RQQKL + Sbjct: 120 AVTEVVGEFGSGKTQLCHQLAVMVQLPEDRGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKSLIRQHNVALLVVDSVIAHFRAEFPGRENLAERQQKLNK 246
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRFU (DNA repair and recombination protein radA OS=Pyrococcus furiosus GN=radA PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 7.963e-29 Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGKTQLAHTL V QLP G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K+ E P +LLIVDS+ + FR ++ GRG LA+RQQKL + Sbjct: 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 263
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRAB (DNA repair and recombination protein radA OS=Pyrococcus abyssi GN=radA PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 7.963e-29 Identity = 70/132 (53.03%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE-----EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGKTQLAHTL V QLP G NG V +IDTE TFRP+RI IA+ G+DP VL +I ARA+ HQ L+ K+ E +P +LLIVDS+ + FR ++ GRG LA+RQQKL + Sbjct: 139 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 270
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_THENV (DNA repair and recombination protein radA OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=radA PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28 Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + LL+VDSVIA FR +F GR LA+RQQKL + Sbjct: 118 AVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNVALLVVDSVIAHFRSEFPGRENLAERQQKLNK 244 The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bpback to top |