CF510178

Overview
NameCF510178
Unique NameCF510178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig955 contig Csv1_Contig955:1..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRIL (DNA repair and recombination protein radA OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ IA+  G+DP   L+NI YARAY+ +HQ  L+    + + +    LLIVDSVIA FR +F GR  LA+RQQKL +
Sbjct:  118 AVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNVALLIVDSVIAHFRSEFPGRENLAERQQKLNK 244          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_NANEQ (DNA repair and recombination protein radA OS=Nanoarchaeum equitans GN=radA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.317e-28
Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE------EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE +GE+ SGKTQ+ H L V  QLP    G  GK  YIDTEGTFRP+RI  +AE   +DP   L N+ + + +  +HQ      LAA+ +E      EP +L++VDS+ ALFR ++TGRG+LA+RQ KLG+
Sbjct:  108 ALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQM-----LAARKAEELIRKGEPIKLIVVDSLTALFRAEYTGRGQLAERQHKLGR 235          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRAR (DNA repair and recombination protein radA OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.026e-28
Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ +A   G+DP   L+NI YARAY+ +HQ  L+    + + +    L++VDSVIA FR +F GR  LA+RQQKL +
Sbjct:  121 AVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFPGRENLAERQQKLNK 247          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRAE (DNA repair and recombination protein radA OS=Pyrobaculum aerophilum GN=radA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27
Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE  GEF SGKTQL H L V  QLP    G   K  YIDTE TFRP+RI+ IA+  G+D    L NI YARAY+ +HQ  L+    + + +    LL+VDSVIA FR +F GR  LA+RQQKL +
Sbjct:  121 AVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIKQHNVALLVVDSVIAHFRSEFPGRENLAERQQKLNK 247          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_ARCFU (DNA repair and recombination protein radA OS=Archaeoglobus fulgidus GN=radA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL---LGLAAKMSEE--PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE FGEF SGKTQ+ H L V  QLP +  G  G V  IDTE TFRP+RI+ +AE  G+D   VL NI  A+AY   HQ  L+     LA K+ +E  P RL+IVDS+++ FR ++ GRG LADRQQKL +
Sbjct:  109 AITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNR 240          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_DESK1 (DNA repair and recombination protein radA OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.832e-26
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKL 378
            TE FGE+ SGKTQ+ H L V  QL     G NG+  YIDTEGTFR +RI  +A   G+DP  V+DNI Y RAY  +HQ  ++  L   + +   RL+I+DSV + FR ++ GR  LA+RQQKL
Sbjct:  114 TEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKL 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_DESAM (DNA repair and recombination protein radA OS=Desulfurococcus amylolyticus GN=radA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.832e-26
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKL 378
            TE FGE+ SGKTQ+ H L V  QL     G NG+  YIDTEGTFR +RI  +A   G+DP  V+DNI Y RAY  +HQ  ++  L   + +   RL+I+DSV + FR ++ GR  LA+RQQKL
Sbjct:  114 TEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKL 236          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_SULTO (DNA repair and recombination protein radA OS=Sulfolobus tokodaii GN=radA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGKTQL H L V  QLP    G  GK  YIDTEGTFR +RI  +++  G++P + ++NI Y RA   +HQ  ++  L   +S++P  +L+IVDSV + FR +F GR  LA RQQKL +
Sbjct:  110 TELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKLVIVDSVTSHFRAEFPGRENLAVRQQKLNK 235          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METBF (DNA repair and recombination protein radA OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=radA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25
Identity = 70/139 (50.36%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP----IAERFGM--DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            A TE +GEF SGKTQLAH   V  Q+     G NG V  IDTE TFRP+RI      ++E++GM  DP   L NI  ARAY   HQ  LL+  A  ++ E      P RLLIVDS++A FR ++ GRG LADRQQKL +
Sbjct:  101 AITELYGEFGSGKTQLAHQFAVNVQMDREHGGLNGSVIIIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQI-LLVDSATDLANELREMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNK 238          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_SULSO (DNA repair and recombination protein radA OS=Sulfolobus solfataricus GN=radA PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEF SGKTQL H L V  QLP    G +GK  YIDTEGTFR +RI  +A+  G+D   V++NI Y RA   +HQ  ++  L   +S++P  +L++VDSV + FR ++ GR  LA RQQKL +
Sbjct:  110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235          
The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RADA_PYRIL1.040e-2853.54DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_NANEQ2.317e-2848.12DNA repair and recombination protein radA OS=Nanoa... [more]
RADA_PYRAR3.026e-2851.18DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_PYRAE1.150e-2751.97DNA repair and recombination protein radA OS=Pyrob... [more]
RADA_ARCFU1.150e-2752.27DNA repair and recombination protein radA OS=Archa... [more]
RADA_DESK12.832e-2649.59DNA repair and recombination protein radA OS=Desul... [more]
RADA_DESAM2.832e-2649.59DNA repair and recombination protein radA OS=Desul... [more]
RADA_SULTO1.076e-2549.21DNA repair and recombination protein radA OS=Sulfo... [more]
RADA_METBF1.836e-2550.36DNA repair and recombination protein radA OS=Metha... [more]
RADA_SULSO5.341e-2549.21DNA repair and recombination protein radA OS=Sulfo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-693 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bp
GGAGCCACCACAGAAGCTTTTGGGGAGTTCCGGTCTGGGAAAACACAGCT
TGCTCATACCCTATGCGTTTGCACGCAGCTTCCTACAAATATGCGGGGTG
GGAATGGGAAGGTTGCTTACATTGACACTGAAGGAACTTTCCGCCCTGAT
AGGATTGTACCCATAGCTGAAAGATTTGGAATGGACCCAGGAGCTGTCCT
TGACAATATCATTTATGCTCGTGCGTACACATATGAGCATCAGTACAACC
TACTTCTTGGTCTGGCAGCAAAAATGTCTGAAGAACCATTCAGACTTCTG
ATTGTGGATTCAGTGATTGCCCTCTTTCGAGTAGATTTCACAGGAAGAGG
AGAACTTGCAGATCGACAGCAAAAATTGGGACAAATGCT
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