CF510178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRIL (DNA repair and recombination protein radA OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28 Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ IA+ G+DP L+NI YARAY+ +HQ L+ + + + LLIVDSVIA FR +F GR LA+RQQKL + Sbjct: 118 AVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNVALLIVDSVIAHFRSEFPGRENLAERQQKLNK 244
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_NANEQ (DNA repair and recombination protein radA OS=Nanoarchaeum equitans GN=radA PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.317e-28 Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSE------EPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE +GE+ SGKTQ+ H L V QLP G GK YIDTEGTFRP+RI +AE +DP L N+ + + + +HQ LAA+ +E EP +L++VDS+ ALFR ++TGRG+LA+RQ KLG+ Sbjct: 108 ALTEFYGEYGSGKTQVGHQLAVDVQLPPEQGGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQM-----LAARKAEELIRKGEPIKLIVVDSLTALFRAEYTGRGQLAERQHKLGR 235
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRAR (DNA repair and recombination protein radA OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 3.026e-28 Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ +A G+DP L+NI YARAY+ +HQ L+ + + + L++VDSVIA FR +F GR LA+RQQKL + Sbjct: 121 AVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFPGRENLAERQQKLNK 247
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_PYRAE (DNA repair and recombination protein radA OS=Pyrobaculum aerophilum GN=radA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27 Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE GEF SGKTQL H L V QLP G K YIDTE TFRP+RI+ IA+ G+D L NI YARAY+ +HQ L+ + + + LL+VDSVIA FR +F GR LA+RQQKL + Sbjct: 121 AVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKSIIKQHNVALLVVDSVIAHFRSEFPGRENLAERQQKLNK 247
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_ARCFU (DNA repair and recombination protein radA OS=Archaeoglobus fulgidus GN=radA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27 Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL---LGLAAKMSEE--PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE FGEF SGKTQ+ H L V QLP + G G V IDTE TFRP+RI+ +AE G+D VL NI A+AY HQ L+ LA K+ +E P RL+IVDS+++ FR ++ GRG LADRQQKL + Sbjct: 109 AITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKKEGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNR 240
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_DESK1 (DNA repair and recombination protein radA OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.832e-26 Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKL 378 TE FGE+ SGKTQ+ H L V QL G NG+ YIDTEGTFR +RI +A G+DP V+DNI Y RAY +HQ ++ L + + RL+I+DSV + FR ++ GR LA+RQQKL Sbjct: 114 TEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKL 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_DESAM (DNA repair and recombination protein radA OS=Desulfurococcus amylolyticus GN=radA PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.832e-26 Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKL 378 TE FGE+ SGKTQ+ H L V QL G NG+ YIDTEGTFR +RI +A G+DP V+DNI Y RAY +HQ ++ L + + RL+I+DSV + FR ++ GR LA+RQQKL Sbjct: 114 TEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPGREHLAERQQKL 236
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_SULTO (DNA repair and recombination protein radA OS=Sulfolobus tokodaii GN=radA PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25 Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGKTQL H L V QLP G GK YIDTEGTFR +RI +++ G++P + ++NI Y RA +HQ ++ L +S++P +L+IVDSV + FR +F GR LA RQQKL + Sbjct: 110 TELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKLVIVDSVTSHFRAEFPGRENLAVRQQKLNK 235
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_METBF (DNA repair and recombination protein radA OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=radA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.836e-25 Identity = 70/139 (50.36%), Postives = 85/139 (61.15%), Query Frame = 1 Query: 4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVP----IAERFGM--DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE------PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 A TE +GEF SGKTQLAH V Q+ G NG V IDTE TFRP+RI ++E++GM DP L NI ARAY HQ LL+ A ++ E P RLLIVDS++A FR ++ GRG LADRQQKL + Sbjct: 101 AITELYGEFGSGKTQLAHQFAVNVQMDREHGGLNGSVIIIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAYNSNHQI-LLVDSATDLANELREMGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKLNK 238
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RADA_SULSO (DNA repair and recombination protein radA OS=Sulfolobus solfataricus GN=radA PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 5.341e-25 Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP-FRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384 TE FGEF SGKTQL H L V QLP G +GK YIDTEGTFR +RI +A+ G+D V++NI Y RA +HQ ++ L +S++P +L++VDSV + FR ++ GR LA RQQKL + Sbjct: 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235 The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bpback to top |