CF510185

Overview
NameCF510185
Unique NameCF510185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig459 contig Csv1_Contig459:361..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.449e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.449e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.449e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.198e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF510185 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF510185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
UBIQ_AVEFA2.449e-22100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF2.449e-22100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH2.449e-22100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBL1_ORYSJ3.198e-2298.04Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_XENLA5.455e-2298.04Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_TETPY5.455e-2298.04Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_STRPU5.455e-2298.04Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_SPOFR5.455e-2298.04Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT5.455e-2298.04Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT5.455e-2298.04Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-700 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510185 ID=CF510185; Name=CF510185; organism=Citrus sinensis; type=EST; length=217bp
GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAGCAGAG
GCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATT
ACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCGTGGT
GGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGA
GGTGGAGAGTTCAGATA
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