CF510192

Overview
NameCF510192
Unique NameCF510192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length212
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13560 contig Csv1_Contig13560:379..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 2 
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            EL + E +L+RRE D++R+EEA   AG+ +E+KNWPPFFPIIHHDIANEIP +LQ+LQY+AFA++LG+ L
Sbjct:   69 ELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVL 138
[Close]
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            EL   EA+L+RRE D+RR+EEA   AG+ +EEKNWPPFFPIIHHDIANEIP + Q+LQY+AFA++LG+ L
Sbjct:   77 ELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVL 146
[Close]
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.491e-22
Identity = 42/65 (64.62%), Postives = 58/65 (89.23%), Query Frame = 2 
Query:   17 EAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            EAELR++E D++R+EEA A+ G+ +++KNWPPFFPIIHHDIA EIP+H Q+LQY+AFA++LG+ L
Sbjct:   65 EAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVL 129
The following BLAST results are available for this feature:
BLAST of CF510192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM6_ORYSJ1.887e-2264.29Secretory carrier-associated membrane protein 6 OS... [more]
SCAM5_ORYSJ1.887e-2267.14Secretory carrier-associated membrane protein 5 OS... [more]
SCAM4_ARATH5.491e-2264.62Secretory carrier-associated membrane protein 4 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510192 ID=CF510192; Name=CF510192; organism=Citrus sinensis; type=EST; length=212bp
GGAACTTCAAGCTAAGGAGGCTGAATTAAGAAGGCGGGAGCAGGATGTAA
GAAGGAAAGAAGAAGCTGCAGCACGAGCTGGAATTGTTCTTGAGGAGAAA
AACTGGCCACCATTTTTCCCCATTATTCATCATGACATTGCAAACGAAAT
ACCAATTCATCTACAAAGGCTGCAATATGTTGCATTTGCAACATATTTAG
GATTGTTTTTGT
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