CF510206

Overview
NameCF510206
Unique NameCF510206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.002e-11
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FG+G  +S+TLP +ATRAAMLVR+NTLLQGYSGI
Sbjct:  131 FGSG--NSNTLPSAATRAAMLVRINTLLQGYSGI 162          

HSP 2 Score: 36.1946 bits (82), Expect = 2.002e-11
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  121 KPITKLLNHNITPCLPLRGT 180
            K I  LLN NITPCLPLRGT
Sbjct:  168 KAIATLLNKNITPCLPLRGT 187          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.373e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FG GT+  H LP +ATRAAMLVRVNTLLQGYSGI
Sbjct:  126 FGTGTDG-HVLPAAATRAAMLVRVNTLLQGYSGI 158          

HSP 2 Score: 33.8834 bits (76), Expect = 3.373e-11
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            I  LLN N+TPCLPLRGT
Sbjct:  166 IATLLNANVTPCLPLRGT 183          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 9.570e-11
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FG G++  HTLP    RAAMLVR+NTLLQGYSGI
Sbjct:  129 FGTGSDG-HTLPSETVRAAMLVRINTLLQGYSGI 161          

HSP 2 Score: 35.8094 bits (81), Expect = 9.570e-11
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKLLN  +TPCLPLRGT
Sbjct:  169 ITKLLNTGVTPCLPLRGT 186          
The following BLAST results are available for this feature:
BLAST of CF510206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PALY_BROFI2.002e-1176.47Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PALY_WHEAT3.373e-1179.41Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL1_ORYSJ9.570e-1170.59Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-721 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510206 ID=CF510206; Name=CF510206; organism=Citrus sinensis; type=EST; length=182bp
CTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAA
GGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGC
ATCCCGATTTGAAATCCTGGAAGCCGATCACAAAGCTGCTCAATCACAAC
ATCACTCCATGCCTCCCTCTTCGCGGCACAAT
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