CF510209

Overview
NameCF510209
Unique NameCF510209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length225
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.707e-16
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.707e-16
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.707e-16
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 6.031e-16
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK ++ KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    1 MAPRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_AEDAE (40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.031e-16
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 3
Query:   54 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +  KEE  V+LGP VR+GE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    1 MAPRKNKTVKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14B_ANOGA (40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.031e-16
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 3
Query:   63 RKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            RK +  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    5 RKNKVAKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTG 59          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14A_ANOGA (40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.877e-16
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 3
Query:   63 RKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            RK +  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    5 RKNKVVKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTG 59          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_NEUCR (40S ribosomal protein S14 OS=Neurospora crassa GN=rps-14 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.344e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   54 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M  +K   P +EN++LGP +R+GE VFGVA IFASFNDTF+HVTDLSGRET  R+ G
Sbjct:    1 MPPKKAARPAQENISLGPQIREGELVFGVARIFASFNDTFVHVTDLSGRETTDRVIG 57          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_BOMMO (40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.993e-15
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 3
Query:   54 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TG
Sbjct:    1 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_PROCL (40S ribosomal protein S14 OS=Procambarus clarkii GN=RPS14 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.106e-15
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 3
Query:   54 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +  KEE  V LGP V DGE VF V HI+AS+NDTF+HVTDLSGRET+VRITG
Sbjct:    1 MAPRKGKVQKEEVQVQLGPQVLDGEKVFAVCHIYASYNDTFVHVTDLSGRETIVRITG 58          
The following BLAST results are available for this feature:
BLAST of CF510209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS14_MOUSE2.707e-1668.9740S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN2.707e-1668.9740S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR2.707e-1668.9740S ribosomal protein S14 OS=Cricetulus griseus GN... [more]
RS14_RAT6.031e-1667.2440S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_AEDAE6.031e-1668.9740S ribosomal protein S14 OS=Aedes aegypti GN=RpS1... [more]
RS14B_ANOGA6.031e-1672.7340S ribosomal protein S14b OS=Anopheles gambiae GN... [more]
RS14A_ANOGA7.877e-1672.7340S ribosomal protein S14a OS=Anopheles gambiae GN... [more]
RS14_NEUCR1.344e-1564.9140S ribosomal protein S14 OS=Neurospora crassa GN=... [more]
RS14_BOMMO2.993e-1570.6940S ribosomal protein S14 OS=Bombyx mori GN=RpS14 ... [more]
RS14_PROCL5.106e-1568.9740S ribosomal protein S14 OS=Procambarus clarkii G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-724 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510209 ID=CF510209; Name=CF510209; organism=Citrus sinensis; type=EST; length=225bp
CTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTGTCATCAGCA
GCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACTCT
TGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTGCCCACATTT
TTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAAGA
GAAACTCTTGTGCGCATTACTGGGG
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