CF510209

Overview
NameCF510209
Unique NameCF510209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length225
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_CAEEL (40S ribosomal protein S14 OS=Caenorhabditis elegans GN=rps-14 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.709e-15
Identity = 34/58 (58.62%), Postives = 48/58 (82.76%), Query Frame = 3
Query:   51 AMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            A +R+   + ++  V+LGP  ++GE +FGVAHIFASFNDTF+H+TD+SGRET+VR+TG
Sbjct:    2 APARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTG 59          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_PIG (40S ribosomal protein S14 (Fragment) OS=Sus scrofa GN=RPS14 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.373e-14
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   63 RKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            RK +E KEE V +LGP V +GE+VFGV HIFAS NDTF+HVTDLSG E++ R+TG
Sbjct:    2 RKGKEKKEEQVISLGPQVAEGENVFGVCHIFASPNDTFVHVTDLSGXESICRVTG 56          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_SCHPO (40S ribosomal protein S14 OS=Schizosaccharomyces pombe GN=rps14a PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.145e-13
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   99 LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            +GP +R GE VFGVAHIFASFNDTF+H+TDL+G+ET+VR+TG
Sbjct:    5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTG 46          
The following BLAST results are available for this feature:
BLAST of CF510209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS14_CAEEL8.709e-1558.6240S ribosomal protein S14 OS=Caenorhabditis elegan... [more]
RS14_PIG7.373e-1467.2740S ribosomal protein S14 (Fragment) OS=Sus scrofa... [more]
RS14_SCHPO2.145e-1373.8140S ribosomal protein S14 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-724 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510209 ID=CF510209; Name=CF510209; organism=Citrus sinensis; type=EST; length=225bp
CTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTGTCATCAGCA
GCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACTCT
TGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTGCCCACATTT
TTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAAGA
GAAACTCTTGTGCGCATTACTGGGG
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