CF510214

Overview
NameCF510214
Unique NameCF510214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16
Identity = 38/73 (52.05%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS-CMERILERYER 347
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKA+E++VLCDA+V++I+ S+ GKL E+ + S   +++ + Y++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQK 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.340e-15
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            M R R ++KRIE+   RQVTFSKRR GL KKA E+SVLCDA+VALIVFS+ GKL  +++ S M  I+++Y  +
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSS-MNEIIDKYNTH 72          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.984e-15
Identity = 36/73 (49.32%), Postives = 59/73 (80.82%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYER 347
            MGRG++++++IENK NRQVTFSKRR+G++KKA E++VLCDA+V+L++ S+  KL  Y S    ++++ + Y++
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQK 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.648e-15
Identity = 35/70 (50.00%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 341
            MGRG++ +++I++  +RQVTFSKRR GL+KKA E+++LCDAEV LI+FS   KL+++++ S ++  +ER+
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS-VKSTIERF 69          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY--STDSCMERILERYE 344
            MGRGR ++KRIEN   RQ TF KRR GL KKA E++VLCDA++ L++FS  GKL+ +   T   +   +ERYE
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYE 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 341
            M R R +++RIE+   RQVTFSKRR GL KKA E++VLCDA+VAL+VFS+ GKL ++++ S M  I+++Y
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS-SNMNEIIDKY 69          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 3
Query:  135 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY---STDSCMERIL 332
            GR ++++ +++N+ N QVTFSKRRSGL KKA E+  LC AEVA++VFS   K+F +   + DS ++R +
Sbjct:    7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFI 75          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.415e-11
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  129 NMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 341
            ++GR ++ + +I+ + +RQVTFSKRR+GL KKA E+  LC AE+ +IVFS   K F +   S +E +L+RY
Sbjct:   61 SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS-VESVLDRY 130          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.607e-11
Identity = 27/59 (45.76%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 308
            MGR +++++RI +  NR VTF KR++GL KKAHE+SVLC  ++A+I+  +    +E+S+
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSS 59          
The following BLAST results are available for this feature:
BLAST of CF510214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS1_PETHY6.013e-1652.05Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD22_ORYSJ1.340e-1557.53MADS-box transcription factor 22 OS=Oryza sativa s... [more]
CMB2_DIACA2.984e-1549.32MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AGL17_ARATH6.648e-1550.00Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD32_ORYSJ8.683e-1553.42MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MAD55_ORYSJ1.481e-1455.71MADS-box transcription factor 55 OS=Oryza sativa s... [more]
AGL62_ARATH1.533e-1147.83Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AGL61_ARATH3.415e-1146.48Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
RLM1_YEAST7.607e-1145.76Transcription factor RLM1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-729 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510214 ID=CF510214; Name=CF510214; organism=Citrus sinensis; type=EST; length=352bp
CAGCACACTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGA
GATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATT
GCCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGC
AGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAG
CGAAGGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGA
CGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAAT
ACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTAT
TG
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