CF510214

Overview
NameCF510214
Unique NameCF510214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length352
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.441e-17
Identity = 40/73 (54.79%), Postives = 59/73 (80.82%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYER 347
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EI+VLCDA+V+LI+F   GK+ EY S  + +  +L+ Y++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.189e-17
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERY 341
            M R ++Q+++I+N   RQVTFSKRR GL KKA E+SVLCDA+VALI+FS+ GKLFE+ + S M+ +LER+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSS-MKEVLERH 69          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.189e-17
Identity = 40/73 (54.79%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYER 347
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKAHE+SVLCDA+V++I+ S+  KL EY S  +  +++ ++Y++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQK 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.164e-17
Identity = 41/73 (56.16%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYER 347
            MGRG++++KRIEN  NR VTFSKRR+GL+KKA EI+VLCDA+VALI+F++ GK+ +Y   S  +  +L++Y++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQK 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.439e-17
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERY 341
            MGRG++++K+IEN+  RQVTFSKRR+GL+KK  E+S+LCDA + LIVFS  GKL E+ S  + M ++++RY
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRY 71          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.103e-17
Identity = 39/73 (53.42%), Postives = 59/73 (80.82%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            MG+G++++KRIE+   RQVTFSKRR+G LKKA+E++VLCDA+V ++VFS KGKLF++ +   +  ++E + RY
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVI--LMELFHRY 71          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.103e-17
Identity = 39/73 (53.42%), Postives = 59/73 (80.82%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYER 347
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EISVLCDA V++I+F++ GK+ E+ S  + +  +L+ Y +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK 73          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.277e-17
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERY 350
            MGR ++Q+ RI ++ NRQVTF+KR+ G++KKA+E+SVLCD E+ALI+FS+  KL++Y STD  M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD--MDRVLLKYTEY 72          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.277e-17
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  138 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERY 350
            R R+ ++RI+N   RQVTFSKRR GL KKA E+S+LCDAEV L+VFS  GKLF++++ S ME+I++RY  +
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS-MEQIIDRYNSH 91          
BLAST of CF510214 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.212e-16
Identity = 37/71 (52.11%), Postives = 59/71 (83.10%), Query Frame = 3
Query:  132 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYE 344
            MGR +V++KRIENK +RQVTFSKRR+GL++KA ++S+LC++ +A++V S  GKL++ ++   M +I++RYE
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE 71          
The following BLAST results are available for this feature:
BLAST of CF510214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS2_PETHY2.441e-1754.79Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
SVP_ARATH3.189e-1760.00MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
DEFA_ANTMA3.189e-1754.79Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
PIST_ARATH4.164e-1756.16Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
TT16_ARATH5.439e-1756.34Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD30_ORYSJ7.103e-1753.42MADS-box transcription factor 30 OS=Oryza sativa s... [more]
GLOB_ANTMA7.103e-1753.42Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MEF2_DROME9.277e-1755.41Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MAD47_ORYSJ9.277e-1757.75MADS-box transcription factor 47 OS=Oryza sativa s... [more]
AGL31_ARATH1.212e-1652.11Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-729 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510214 ID=CF510214; Name=CF510214; organism=Citrus sinensis; type=EST; length=352bp
CAGCACACTACTCACTACCTGCTCTAATCTCTGTTCTATAAAAGTACAGA
GATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAGAATT
GCCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGC
AGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAG
CGAAGGTCTGGTTTATTGAAAAAAGCCCATGAGATCTCTGTGCTTTGTGA
CGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAACTCTTTGAAT
ACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTAT
TG
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