CF510223

Overview
NameCF510223
Unique NameCF510223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig957 contig Csv1_Contig957:1..450. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_CANGA (Ribosome biogenesis protein YTM1 OS=Candida glabrata GN=YTM1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  179 NSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            ++ +V+V+F T+ K     V    +  P +L R+GLS +VN+LL++  P     PFDFLI+GEL+R SL+++L  KG+S+E  L +EY +A
Sbjct:    4 DTSQVKVKFFTREKDESLHVDDVPMYAPISLKRYGLSEIVNHLLESETPI----PFDFLIDGELLRTSLQEYLTKKGLSSETTLTVEYTRA 90          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_KLULA (Ribosome biogenesis protein YTM1 OS=Kluyveromyces lactis GN=YTM1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  188 RVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            +V++RF T+ +     V    I  P +L R+GLS +VN+LL+      KS PFDFLI+GEL+R SL+ +L+ KG+S+E  L +EY +A
Sbjct:    7 QVKLRFFTREEDETLHVNDAPIYAPVSLKRYGLSEIVNHLLELP----KSMPFDFLIDGELLRTSLQDYLIKKGLSSETFLNVEYTRA 90          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPTN (Ribosome biogenesis protein ytm1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ytm1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            R+V+V+  +K +    +P ++  I IP+ L R+ LS++VNNLL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:   12 RQVRVQLTSK-QEDIALPEDTGPILIPTGLRRYALSTLVNNLLGNEKPI----PFEFLINGAFLRTSIDEYLTANGISAETTLEIEYVRA 96          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_YEAST (Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae GN=YTM1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  176 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            E+  +V++RF T+ K     V    +  P +L R+GLS +VN+LL +  P     PFDFLI GEL+R SL  +L  KG+S+E  L +EY +A
Sbjct:    3 EDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV----PFDFLIEGELLRTSLHDYLTKKGLSSEASLNVEYTRA 90          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_YEAS7 (Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=YTM1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  176 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            E+  +V++RF T+ K     V    +  P +L R+GLS +VN+LL +  P     PFDFLI GEL+R SL  +L  KG+S+E  L +EY +A
Sbjct:    3 EDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV----PFDFLIEGELLRTSLHDYLTKKGLSSEASLNVEYTRA 90          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPCL (Ribosome biogenesis protein ytm1 OS=Aspergillus clavatus GN=ytm1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  248 IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            I +P+ L R+ LS++VNNLL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:   40 ILVPTGLRRYALSTLVNNLLSNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRA 102          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPFU (Ribosome biogenesis protein ytm1 OS=Aspergillus fumigatus GN=ytm1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            R+V+V+  +K +    +P N+  I +P++L R+ LS++VN LL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:   18 RQVRVQLTSK-QEDIALPDNTGPILVPTSLRRYALSTLVNKLLGNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRA 102          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPFC (Ribosome biogenesis protein ytm1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            R+V+V+  +K +    +P N+  I +P++L R+ LS++VN LL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:   18 RQVRVQLTSK-QEDIALPDNTGPILVPTSLRRYALSTLVNKLLGNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRA 102          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: WDR12_DICDI (Ribosome biogenesis protein WDR12 homolog OS=Dictyostelium discoideum GN=wdr12 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  161 EDQNEENSRRVQVRFKTKLK-----PPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            E +N+ N+++V+   K K+K        +V    IA+P  L R GLS V+++L +  N    S+PFDFLING+ +R +L++ +    +S E+++ IEY++A
Sbjct:    2 ESENKNNNKKVKEESKVKVKFITNDANIRVTDTPIAVPVRLGRLGLSEVIHHLREEENET--SKPFDFLINGKFIRTTLDKHIKNANLSEEQIITIEYLEA 100          
The following BLAST results are available for this feature:
BLAST of CF510223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YTM1_CANGA1.398e-1141.76Ribosome biogenesis protein YTM1 OS=Candida glabra... [more]
YTM1_KLULA1.826e-1144.32Ribosome biogenesis protein YTM1 OS=Kluyveromyces ... [more]
YTM1_ASPTN1.826e-1144.44Ribosome biogenesis protein ytm1 OS=Aspergillus te... [more]
YTM1_YEAST2.385e-1142.39Ribosome biogenesis protein YTM1 OS=Saccharomyces ... [more]
YTM1_YEAS72.385e-1142.39Ribosome biogenesis protein YTM1 OS=Saccharomyces ... [more]
YTM1_ASPCL2.385e-1150.75Ribosome biogenesis protein ytm1 OS=Aspergillus cl... [more]
YTM1_ASPFU3.115e-1143.33Ribosome biogenesis protein ytm1 OS=Aspergillus fu... [more]
YTM1_ASPFC3.115e-1143.33Ribosome biogenesis protein ytm1 OS=Aspergillus fu... [more]
WDR12_DICDI4.069e-1135.64Ribosome biogenesis protein WDR12 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-738 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510223 ID=CF510223; Name=CF510223; organism=Citrus sinensis; type=EST; length=450bp
CAATCTCTTTCTTTAGTGATTGCTGCTAAAACCCTAGCTTAGCTTCCCTC
CTCTTTAACTAAAACCCTAGCTCAATCTGTGATTCCGCAAATTAACTTCA
TCCCATTAAAAAATAAAAAACCGAAAAAAAGGGCAAATGGACATGAACAT
CGAAACACCGGAAGATCAAAATGAGGAAAATTCGAGGCGCGTTCAAGTTC
GCTTCAAAACGAAGCTAAAACCTCCGCAAAAAGTTCCAAGCAACTCAATT
GCAATCCCTTCTAATCTTACTCGCTTCGGTCTATCTTCTGTCGTGAACAA
CTTGCTACAAGCAGTGAATCCTGAGTGGAAATCTGAGCCGTTTGATTTTT
TGATCAATGGGGAACTGGTTCGGATGTCGCTTGAGCAGTTTCTTCTCGCC
AAGGGCATTTCTGCGGAAAAAGTTCTGGAAATTGAGTACATAAAGGCTGT
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