CF510246

Overview
NameCF510246
Unique NameCF510246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.939e-13
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2
Query:    8 LSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            LS N  TG+IP SLG+LS L D+ L  N L GE+P    N+  L  L +  N ++GTLP ++ N   L  + + NN L G +    G    L  L + NN F G IP +L
Sbjct:  127 LSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQG--LPLQDLNIENNLFSGPIPDKL 234          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.939e-13
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            + L++NY+ GT+P    S S L  + L +N+L GEIP E GN  +L  L L+ N  +GT+P  L N  +L  + LS+N L G +P  + +L N+   ++++    G IP
Sbjct:  128 IDLAYNYINGTLPREWAS-SNLTFISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIP 234          

HSP 2 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            + L  N L+G IP   G+ S L  L L  N   G IP ELGN+  L+ L L  N+LTGTLPA+L+   N+    +++  L G IP++I     L  L++  +   G IP
Sbjct:  151 ISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIP 258          

HSP 3 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 46/133 (34.59%), Postives = 63/133 (47.37%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALS------------------------NCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L LS N LTGT+P+SL  L  + D ++   QL G IP  + N + LE L +  + LTG +P+ +S                        N T L  I L N ++ G+IPT++  L  L  L LS N   G IP
Sbjct:  198 LLLSSNKLTGTLPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVISVLSNLVNLRISDIRGPVQPFPSLKNVTGLTKIILKNCNISGQIPTYLSHLKELETLDLSFNKLVGGIP 330          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.037e-12
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L LS N +T ++PS L SLS L+ L L  N++   +P  +GN  +L TL L FN ++G +PAA+SN  NL  + L NN     +P  +    +L  + LS+N     +P   G
Sbjct:   95 LDLSGNKIT-SLPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLPVGFG 206          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGE--IPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            L LS N  +GT+P+S G L  L  L L  N L G +P ELG ++ L  L L  N  +G L   + N  +L  + LSNN +G E  + T  G++SNL +L LS     G IP  L
Sbjct:  220 LDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSL 333          

HSP 2 Score: 71.2478 bits (173), Expect = 1.769e-12
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L G +P ++G+L+KL+ L +  N   GE+P  + N++ L+ L    N   G +P        L  + LS N   G +PT  G L +L  L LSNN   G +P ELG
Sbjct:  155 LIGELPETIGNLTKLKSLVVLENGFSGELPASICNLKRLKRLVFAGNSFAGMIPNCFKGLKELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELG 260          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            L LS N  TGTIP SL SL  L  + L  N L G+IP    ++  +  + L  N L+G LP ++ N + L  + L NNHL GE+   + Q   L  L + NN F G IP +L
Sbjct:  127 LFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELD--VLQDLPLKDLNVENNLFNGPIPEKL 236          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L L    L+G +   L  L  LQ L+L+ N + GEIP ELG++  L +L L  N ++G +P++L     L ++ L NN L GEIP  +  L  L +L +SNN   G IP
Sbjct:   75 LDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIP 182          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQ-LSNLAILKLSNNSFYGRIP 328
            LTG I  ++  L  L+ L+L    L G +P  L  ++ L  L L FN LTG +P++LS   NL  + L  N L G IP   GQ + N+  L LS+N   G IP
Sbjct:  107 LTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIP 209          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQ-TLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSF 313
            + LSFN L+G+IPSSL SL KL+ L+L  N+L G IP   G     + +LFL  N+L+GT+P +L N  +   I LS N L G+     G      I+ +S N F
Sbjct:  148 IDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPESFGTFSGKVPSLFLSHNQLSGTIPKSLGN-PDFYRIDLSRNKLQGDASILFGAKKTTWIVDISRNMF 251          

HSP 2 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 41/107 (38.32%), Postives = 53/107 (49.53%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLW-LNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            ++G IP  +G L  L  L    L  L G I P +  ++ L  L L +  LTG +P  LS   NL +I LS N L G IP+ +  L  L  L+LS N   G IP   G
Sbjct:   82 ISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPESFG 188          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.721e-12
Identity = 43/115 (37.39%), Postives = 59/115 (51.30%), Query Frame = 2
Query:    8 LSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNI-QTLETLFLDFNELTGTLPAAL---SNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L+ N L+G+IP  LG  S L D+ L  N L G +PP + N+   L +  +  N L+G LP      S C NL  + L  N   GE P +I +   +  L LS+N F G +P  LG
Sbjct:  130 LNINSLSGSIPLELGYTSSLSDVDLSGNALAGVLPPSIWNLCDKLVSFKIHGNNLSGVLPEPALPNSTCGNLQVLDLGGNKFSGEFPEFITRFKGVKSLDLSSNVFEGLVPEGLG 244          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLW-LNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L+G IP ++G L  L+ L    L+ L G+IPP +  ++ L+ + L +  L+G +PA  S   NL ++ LS N+L G IP  +  L NL  L L  N   G IP   G
Sbjct:   85 LSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIPDSFG 191          

HSP 2 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLS-NLAILKLSNNSFYGRIP 328
            LTG IP ++  L  L+ ++L    L G +P     ++ L  L L FN L+G +P +LS   NL  + L  NHL G IP   G+ + +   L LS+N   G+IP
Sbjct:  110 LTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIPDSFGKFAGSTPGLHLSHNQLSGKIP 212          
The following BLAST results are available for this feature:
BLAST of CF510246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
SRF3_ARATH7.939e-1340.00Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
RKF1_ARATH7.939e-1336.70Probable LRR receptor-like serine/threonine-protei... [more]
Y5815_ARATH1.037e-1237.17Probably inactive leucine-rich repeat receptor-lik... [more]
PII2_ARATH1.354e-1240.35Piriformospora indica-insensitive protein 2 OS=Ara... [more]
SRF1_ARATH2.310e-1240.18Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
SERK5_ARATH2.310e-1239.45Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
PGIP_PYRCO3.017e-1239.81Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP2_ARATH3.017e-1241.90Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
TMKL1_ARATH6.721e-1237.39Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
PGIP_VITVI8.778e-1237.38Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-761 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510246 ID=CF510246; Name=CF510246; organism=Citrus sinensis; type=EST; length=341bp
ACTCCATTTAAGCTTCAACTATCTTACTGGAACTATTCCTTCAAGCTTGG
GGTCTCTCTCCAAACTTCAGGATTTGAAGCTTTGGTTGAATCAGCTCCAT
GGAGAGATCCCACCAGAGCTTGGCAACATTCAGACACTGGAAACTCTGTT
TCTTGACTTTAACGAGTTGACGGGAACCTTGCCTGCTGCTTTGAGCAACT
GCACCAATCTTAATTGGATCTCATTGTCGAATAATCATTTGGGTGGTGAA
ATTCCCACTTGGATTGGCCAGCTTTCGAACCTCGCCATTCTCAAACTCAG
CAACAACTCCTTTTATGGTAGGATCCCTCCGGAGCTTGGAG
back to top