CF510246

Overview
NameCF510246
Unique NameCF510246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIG-QLSNLAIL------KLSNNSFYGRIPPEL 337
            L+G +P+++G+L KL  L L     +G IP  +GN++ L  L L+ N+ +GT+PA++   + L W  +++N L G++P   G  L  L +L         NN   G IP +L
Sbjct:  105 LSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIGNLEQLTRLSLNLNKFSGTIPASMGRLSKLYWFDIADNQLEGKLPVSDGASLPGLDMLLQTGHFHFGNNKLSGEIPEKL 216          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            L L  N+L G+IP S    S L+ L L  N+L G IP  +  +  L  L L+ N LTG +P  L++C +L  I LS N + G IP  I +L+ L +L LS N   G  P  L
Sbjct:  188 LDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFV--LPALSVLDLNQNLLTGPVPPTLTSCGSLIKIDLSRNRVTGPIPESINRLNQLVLLDLSYNRLSGPFPSSL 297          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            L L  N L+G +P  + SL  L  + L  N   GE+P  +   + L  L L FN  TG +PA   N   L  +SL NN L G +P       +L  L LSNN   G IP  LG
Sbjct:  117 LSLRSNLLSGNLPPDIHSLPSLDYIYLQHNNFSGEVPSFVS--RQLNILDLSFNSFTGKIPATFQNLKQLTGLSLQNNKLSGPVPNL--DTVSLRRLNLSNNHLNGSIPSALG 225          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLW-LNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            ++G IP+ +G L  L+ L    L+ L G I P +  ++ L  L L +  LTG +P  +S   NL ++ LS N L G IP+ +  L  +  L+LS N   G IP   G
Sbjct:   82 ISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFG 188          

HSP 2 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQ-TLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSF 313
            L LSFN L+G+IPSSL +L K+  L+L  N+L G IP   G+   T+  L L  N+L+G +P +L N  + N I LS N L G+     G       + LS N F
Sbjct:  148 LELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKSLGN-IDFNRIDLSRNKLQGDASMLFGSNKTTWSIDLSRNMF 251          

HSP 3 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   74 LKLWLNQLHGEIPPELGNIQTLETL-FLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            L ++  Q+ G+IP E+G++  LETL F   + LTGT+   ++   NL  + LS  +L G IP +I QL NL  L+LS N   G IP  L
Sbjct:   75 LTIFSGQISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSL 163          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 2
Query:   95 LHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L G +P  +GN+  LETL   FN L G LP   +N T L ++ L  N   GEIP+++  L N+  + L+ N+F GRIP
Sbjct:   75 LSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIP 152          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 2
Query:   23 LTGTIP-SSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L G IP +++  LS L+ L L  N + GE P +   ++ L  L+L  N L+G LP   S   NL  ++LSNN   G IP+ + +L  +  L L+NN+  G IP
Sbjct:   80 LNGQIPPNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIP 182          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPEL 337
            L+L+ N  TG    SL  ++ L+ L L  NQ  G+I  +   + +L TL   FN  T +LPA  S+ T+L  + L NN   G +    G    L  L ++NN F G IP  L
Sbjct:  123 LNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPATFSSLTSLKSLYLQNNQFSGTVDVLAG--LPLETLNIANNDFTGWIPSSL 232          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIP 328
            L LS N LTG+IP    S+ +L+DL    N+L G  P  L  +  L  L L+ N+ +G +P  +    +L  + L +N   G +   +G L NL  +++S+N+F G IP
Sbjct:  119 LDLSRNSLTGSIPKEWASM-RLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          

HSP 2 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   23 LTGTIPSSLGSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRIPPELG 340
            LTG +P     L  L+ L L  N L G IP E  +++ LE L    N L+G  P  L+  T L  +SL  N   G IP  IGQL +L  L L +N+F G +  +LG
Sbjct:  102 LTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMR-LEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLG 206          
BLAST of CF510246 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    2 LHLSFNYLTGTIPSSL-GSLSKLQDLKLWLNQLHGEIPPELGNIQTLETLFLDFNELTGTLPAALSNCTNLNWISLSNNHLGGEIPTWIGQLSNLAILKLSNNSFYGRI 325
            L L    L+G IP  + G+L++L+ L L LN L G +P +LG+   L  L+L  N  +G +P  L + +NL  ++L+ N   GEI +    L+ L  L L NN   G +
Sbjct:   75 LRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL 183          
The following BLAST results are available for this feature:
BLAST of CF510246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
Y5977_ARATH1.146e-1133.93Probable leucine-rich repeat receptor-like protein... [more]
TMM_ARATH1.497e-1140.18Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
Y5830_ARATH3.336e-1138.05Probable inactive receptor kinase At5g58300 OS=Ara... [more]
PGIP1_ARATH3.336e-1135.51Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
Y5659_ARATH4.357e-1142.31Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y4374_ARATH4.357e-1137.86Probable inactive receptor kinase At4g23740 OS=Ara... [more]
SRF6_ARATH4.357e-1135.71Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
Y1765_ARATH5.690e-1134.86Probable LRR receptor-like serine/threonine-protei... [more]
RLK90_ARATH5.690e-1135.78Probable inactive receptor kinase RLK902 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-761 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510246 ID=CF510246; Name=CF510246; organism=Citrus sinensis; type=EST; length=341bp
ACTCCATTTAAGCTTCAACTATCTTACTGGAACTATTCCTTCAAGCTTGG
GGTCTCTCTCCAAACTTCAGGATTTGAAGCTTTGGTTGAATCAGCTCCAT
GGAGAGATCCCACCAGAGCTTGGCAACATTCAGACACTGGAAACTCTGTT
TCTTGACTTTAACGAGTTGACGGGAACCTTGCCTGCTGCTTTGAGCAACT
GCACCAATCTTAATTGGATCTCATTGTCGAATAATCATTTGGGTGGTGAA
ATTCCCACTTGGATTGGCCAGCTTTCGAACCTCGCCATTCTCAAACTCAG
CAACAACTCCTTTTATGGTAGGATCCCTCCGGAGCTTGGAG
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