CF510252

Overview
NameCF510252
Unique NameCF510252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_SALTI (Histidine ammonia-lyase OS=Salmonella typhi GN=hutH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL+NGT   +  A   LFEA  L   + +  A+  E + G     D   H  +   GQI+ A +  H+L  +S   +A+  H    +Q P    Y+LR  PQ +G  +  +R   + +  E N
Sbjct:  149 PLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFASAVVCGALTTEAVLGSCRPFDARIHAARGQQGQIDVARLFRHLLTDTS--AIAESHHHCHKVQDP----YSLRCQPQVMGACLTQLRQTKEVLLAEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_RALSO (Histidine ammonia-lyase OS=Ralstonia solanacearum GN=hutH PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++   + G  +++    NG    A+EA   AG     L  KEGLAL+NGT V + LA   LF A  L   + +  A+  +  +G     D   H ++   GQI  AA+   +L GS+     ++ H +   +   QD Y+LR  PQ +G  +++IR A  ++  E N
Sbjct:  152 PLAHMTLAMLGEGDARV---NGVRKPAREALAAAGIAPIALAAKEGLALINGTQVSTALALNGLFLAERLLQAATVAGALSVDAAKGSDAPFDPRVHTVRGQAGQIATAAVYRGLLAGSA----IRRSHLVGDTR--VQDPYSLRCQPQVMGACLDLIRQAGATLLTEAN 312          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_BURCM (Histidine ammonia-lyase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hutH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 52/170 (30.59%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G       G     +D       AG     LQ KEGLAL+NGT   + LA   +F   +L   + +  A+  +   G  +  D   H+L+ H GQI+AAA    +LDGS    + +   + D +Q P    Y+LR  PQ +G  ++ +R A   +  E N
Sbjct:  147 PLAHMSAVLLGVGEVFIRGERASALDGLRV---AGLAPLTLQAKEGLALLNGTQASTALALDNMFSIEDLYRTALVAGALSVDAAAGSVKPFDARIHELRGHRGQIDAAAAYRDLLDGSP---INQSHRDCDKVQDP----YSLRCQPQVMGACLDQMRHAADVLLIEAN 306          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_AGRT5 (Histidine ammonia-lyase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hutH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.056e-12
Identity = 52/170 (30.59%), Postives = 85/170 (50.00%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A ++ G   +   G     + A EA  +AG     L  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+A A + ++L+GS       ++  I+  ++  QD Y +R  PQ  G  ++++R   +++E E N
Sbjct:  151 PLAHMAAVMMGEGEAFYEGAP---LPAGEALAKAGLTPVVLAAKEGLALINGTQTSTALALAGLFRAHRAAQAALITGALSTDAAMGSSAPFHPDIHSLRGHKGQIDAGAALRNLLEGSEI-----RVSHIEGDER-VQDPYCIRCQPQVDGACLDLLRQVARTLEIEAN 311          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_THETN (Histidine ammonia-lyase OS=Thermoanaerobacter tengcongensis GN=hutH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 47/170 (27.65%), Postives = 86/170 (50.59%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++  ++ GR  +   G   E +  +EA ++AG     L  KEGLAL+NGT V S L  + +++A  +  +++ +++I  E ++G  +  D     ++ H GQI +A  +  +++GS  +    ++          QD Y LR  PQ  G   + I +  + +  EIN
Sbjct:  149 PLAHMVLVMIGRGEAFYAG---ERVSGEEAMRRAGIPTITLSSKEGLALINGTQVMSALGCLNVYDAKRIIAVADAVASITLEALRGIIDAFDDRVQMVRPHKGQIVSAKNVRKMVEGSELITRQGEIR--------VQDAYTLRCIPQVHGAVRDAISYIERVLGVEIN 307          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_SPHAL (Histidine ammonia-lyase OS=Sphingopyxis alaskensis GN=hutH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 56/170 (32.94%), Postives = 79/170 (46.47%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A  + G          G I+ A EA  QA     EL PKEGLAL+NGT   +  A   LF A  L   + I  A+  E  +G     D   H L+ H GQ E    +  ++ GS+     +  H ID      QD Y LR  PQ +G  ++++R A  ++  E N
Sbjct:  148 PLAHMAAAMIGVGKIDV---GGAIMPAAEALAQAELTPLELGPKEGLALLNGTQFSTANALAGLFRAETLFRSALITGALSTEAAKGSDAPFDPRIHALRGHIGQREVGGALRTLMAGSA----IRASHAID--DPRVQDPYCLRCQPQVMGAVLDLLRQAGATLGVEAN 308          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_CHLSY (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 51/149 (34.23%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   67 GEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            GE++ A  A ++ G+    L  KEGLAL NGTAV   L  +    A  L+  ++I   +  E + G P   D   H L+  P QIE AA +  +L GS++V         DP  +  QD Y LR  PQ  G   + I +A      E+N
Sbjct:  172 GEVLPAATALERLGWQPLHLAAKEGLALTNGTAVMCALGVIETARAETLSATADIAGCLSLEALYGTPAAFDARLHALRPFPRQIECAAHLRRLLAGSTFV------RNNDP--RHVQDAYTLRCIPQVHGAVRDAIAYARWVFAIELN 312          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_CHLAA (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 51/149 (34.23%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   67 GEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            GE++ A  A ++ G+    L  KEGLAL NGTAV   L  +    A  L+  ++I   +  E + G P   D   H L+  P QIE AA +  +L GS++V         DP  +  QD Y LR  PQ  G   + I +A      E+N
Sbjct:  172 GEVLPAATALERLGWQPLHLAAKEGLALTNGTAVMCALGVIETARAETLSATADIAGCLSLEALYGTPAAFDARLHALRPFPRQIECAAHLRRLLAGSTFV------RNNDP--RHVQDAYTLRCIPQVHGAVRDAIAYARWVFAIELN 312          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_STRGR (Histidine ammonia-lyase OS=Streptomyces griseus GN=hutH PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.801e-12
Identity = 55/169 (32.54%), Postives = 80/169 (47.34%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI 510
            PLS+ A  L G    +A GP+G +  A E     G    EL+ KEGLAL+NGT    G+  M L +  NL   ++I +A+  E + G  +      H ++ HPGQ  +A  M  +L GS         H  D   +  QD Y++R +PQ  G   + +  A     RE+
Sbjct:  149 PLSHCALTLMGE--GEAEGPDGTVRPAGELLAAHGIAPVELREKEGLALLNGTDGMLGMLVMALADLRNLYTSADITAALSLEALLGTDKVLAPELHAIRPHPGQGVSADNMSRVLAGSGLTG-----HHQDDAPR-VQDAYSVRCAPQVNGAGRDTLDHAALVAGREL 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_ANASK (Histidine ammonia-lyase OS=Anaeromyxobacter sp. (strain K) GN=hutH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.801e-12
Identity = 57/174 (32.76%), Postives = 84/174 (48.28%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNG----EIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A +L G   +    P      E +   EA ++AG     LQPKEGLALVNGT   + + ++ L  A  LA L+++  A+  E + G            +  PGQI AAA +  +L GS  +N + +     P     QD Y+LR  PQ  G   + I F    + RE+N
Sbjct:  149 PLAHLALVLIGDGEAFLAPPGAAGRPERLPGGEALRRAGLEPVVLQPKEGLALVNGTQAMAAVGTLALLRAERLAALADLAGAMTLEGLLGSHRPFAPEIQAARGQPGQIAAAAHLRALLAGSE-LNASHQ----GPGCHKVQDPYSLRCMPQVHGAARDGIGFCRGVLAREVN 317          
The following BLAST results are available for this feature:
BLAST of CF510252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
HUTH_SALTI1.056e-1231.18Histidine ammonia-lyase OS=Salmonella typhi GN=hut... [more]
HUTH_RALSO1.056e-1231.18Histidine ammonia-lyase OS=Ralstonia solanacearum ... [more]
HUTH_BURCM1.056e-1230.59Histidine ammonia-lyase OS=Burkholderia ambifaria ... [more]
HUTH_AGRT51.056e-1230.59Histidine ammonia-lyase OS=Agrobacterium tumefacie... [more]
HUTH_THETN1.379e-1227.65Histidine ammonia-lyase OS=Thermoanaerobacter teng... [more]
HUTH_SPHAL1.379e-1232.94Histidine ammonia-lyase OS=Sphingopyxis alaskensis... [more]
HUTH_CHLSY1.379e-1234.23Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_CHLAA1.379e-1234.23Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_STRGR1.801e-1232.54Histidine ammonia-lyase OS=Streptomyces griseus GN... [more]
HUTH_ANASK1.801e-1232.76Histidine ammonia-lyase OS=Anaeromyxobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_123000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-67_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510252 ID=CF510252; Name=CF510252; organism=Citrus sinensis; type=EST; length=513bp
GTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAA
GGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAAC
AAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTT
GTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGA
GGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTG
AAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTG
AAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCT
CGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATC
CTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAA
TGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGA
ACGGGAGATCAAC
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