CF510252

Overview
NameCF510252
Unique NameCF510252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:405..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_SYMTH (Histidine ammonia-lyase OS=Symbiobacterium thermophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 48/150 (32.00%), Postives = 68/150 (45.33%), Query Frame = 1
Query:   64 NGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            NGE +   EA ++ G     L  KEGLAL+NGT   + L S+ L +A  L   ++I +A+ AE +   P   D     L+ H GQ  AA  +  + +GS             P Q   QD Y LR  PQ  G     I    + ++ E+N
Sbjct:  165 NGERLSGAEALQRVGLRPLTLTAKEGLALINGTQAMTALGSLGLHDAQVLLKTADIAAAMTAEALGAIPAAWDPRVQALRLHTGQQAAARNLRRLTEGSRLTT--------RPGQMRTQDPYTLRCLPQVHGASRTAIEHVAQVLDWEMN 306          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_MESSB (Histidine ammonia-lyase OS=Mesorhizobium sp. (strain BNC1) GN=hutH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 51/170 (30.00%), Postives = 82/170 (48.24%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A ++ G   +      GE ++   A  +AG    EL  KEGLAL+NGT   + LA   LF A+  A  + I  A+  +   G         H L+ H GQI+ A  +  +L+ S    + +   E D   +  QD Y +R  PQ  G  ++++R   +++E E N
Sbjct:  148 PLAHMAAVMMGHGEAFF---GGERLNGATALLKAGLQPVELAAKEGLALINGTQTSTALALAGLFRAHRAAQSALITGAMSTDAAMGSSAPFHPEIHTLRGHRGQIDTAEALRALLENSP---IRQSHIEGD---ERVQDPYCIRCQPQVDGACLDLLRSVARTLEIEAN 308          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_DESPS (Histidine ammonia-lyase OS=Desulfotalea psychrophila GN=hutH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 49/170 (28.82%), Postives = 77/170 (45.29%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G   +      G+ +  +E  + AG     L PKEGLAL+NGT   +  A   LF A  L   + +  ++  +   G     + L H ++ H  QI+ AA    +L+ S      K    +       QD Y+LR  PQ +G  +  IR A + I  E N
Sbjct:  150 PLAHMSIVLLGEGEASY---RGQRLSGREGLELAGLSPITLGPKEGLALLNGTQASTAFALQGLFAAEELFATAMVSGSLSLDAALGSRRPFNPLIHAVRGHKSQIDVAASYRQLLEHSEIERSHKFCEAV-------QDPYSLRCQPQVMGACLNQIRNAAEVIGTEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_RHOCS (Histidine ammonia-lyase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=hutH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 50/153 (32.68%), Postives = 71/153 (46.41%), Query Frame = 1
Query:   67 GEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS----SYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            G  + A +    AG    EL PKEGLAL+NGT   + LA   L  A      + +  A+  +  QG     D   H L+   GQI+AAA    +L GS    S+++ A+            QD Y LR  PQ +G  ++ +RFA  ++  E N
Sbjct:  168 GRTVPAADGLAAAGLRPLELGPKEGLALLNGTQASTALALAGLVAAEWAFDAALVAGALSIDAAQGSDTPFDARIHALRGQRGQIDAAAGYRRLLAGSPIRASHLSCAR-----------VQDPYCLRCQPQVMGACLDQLRFAAGTLATEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_PSEPU (Histidine ammonia-lyase OS=Pseudomonas putida GN=hutH PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 52/170 (30.59%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL++++ +L G   ++     G+ + A EA   AG     L  KEGLAL+NGT   +  A   LF A +L   +     +  E + G     D   H+ +   GQI+ AA    +L  SS V+++ K    D +Q P    Y+LR  PQ +G  +  +R A + +  E N
Sbjct:  149 PLAHMSLVLLGEGKARY---KGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NCDKVQDP----YSLRCQPQVMGACLTQLRQAAEVLGIEAN 309          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: HUTH_CAEEL (Probable histidine ammonia-lyase OS=Caenorhabditis elegans GN=F47B10.2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = 1
Query:    4 PLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            PL+++A  L G    K   P      A    K+      EL PKEGLAL+NGT + + L +  L  A+N+A  +++++A+  +V++G     D   H+++ H GQ  +A  +  +L   +  +   + H         QD Y LR  PQ  G   + I F  + I  E+N
Sbjct:  275 PLAHLALGLLGE--GKMWSPTTGWQPADVVLKKNNLEPLELGPKEGLALINGTQMVTALGAYTLERAHNIARQADVIAALSLDVLKGTTRAYDPDIHRIRPHRGQNLSALRLRALLHSEANPSQIAESHR---NCTKVQDAYTLRCVPQVHGVVHDTIEFVREIITTEMN 439          
The following BLAST results are available for this feature:
BLAST of CF510252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
HUTH_SYMTH4.437e-1132.00Histidine ammonia-lyase OS=Symbiobacterium thermop... [more]
HUTH_MESSB4.437e-1130.00Histidine ammonia-lyase OS=Mesorhizobium sp. (stra... [more]
HUTH_DESPS4.437e-1128.82Histidine ammonia-lyase OS=Desulfotalea psychrophi... [more]
HUTH_RHOCS5.795e-1132.68Histidine ammonia-lyase OS=Rhodospirillum centenum... [more]
HUTH_PSEPU7.568e-1130.59Histidine ammonia-lyase OS=Pseudomonas putida GN=h... [more]
HUTH_CAEEL9.885e-1129.41Probable histidine ammonia-lyase OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_123000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-67_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510252 ID=CF510252; Name=CF510252; organism=Citrus sinensis; type=EST; length=513bp
GTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAA
GGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAAC
AAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTT
GTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGA
GGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTG
AAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTG
AAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCT
CGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATC
CTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAA
TGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGA
ACGGGAGATCAAC
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