CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_THEFY (ATP synthase gamma chain OS=Thermobifida fusca (strain YX) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPA--QILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            + E  PL L+E +P   ++LD ++P Y+ ++I  A  ES AS+ A+R + M   TDNA+EL K L+   NQ RQ +IT E+ EIV GA+AL
Sbjct:  206 EAEQGPLPLYEFEPGAEEVLDQLLPKYVTNRIYFALLESAASQHASRRAAMKAATDNAEELVKTLTRQANQARQAEITNEISEIVGGADAL 296          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEFN (ATP synthase gamma chain OS=Shewanella frigidimarina (strain NCIMB 400) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP ++LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA E+  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPDPKEVLDLLLTRYVESQVYQGVVENIASEQAARMVAMKAATDNAGEMIDDLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_NATTJ (ATP synthase gamma chain OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  237 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 473
            FE     +L  ++  YM S + RA  ES ASE  ARM+ M   TDNA+++ + L+++YN+ RQG IT E+LE+V+GAEA
Sbjct:  228 FEPSAGAVLGGLLSSYMKSTLFRALLESKASEQGARMTAMKNATDNAEDMIEELTLSYNKARQGAITQEILEVVSGAEA 306          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIG (ATP synthase gamma chain OS=Haemophilus influenzae (strain PittGG) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E +P  +LD+++  Y+ SQI +A  ++ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 LYEPEPKVLLDSLLVRYLESQIYQAVVDNLASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAEIE (ATP synthase gamma chain OS=Haemophilus influenzae (strain PittEE) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E +P  +LD+++  Y+ SQI +A  ++ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 LYEPEPKALLDSLLVRYLESQIYQAVVDNVASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_FLAJ1 (ATP synthase gamma chain OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            +FE    +I+  ++P  + +Q+ +  ++SFASE  ARM+ M   TDNA EL+  L + YN+ RQ  IT E+LEIV GAEAL
Sbjct:  204 IFEPSKEEIVLTLIPKSLKTQLYKGIRDSFASEHGARMTAMHKATDNATELRNQLKLTYNKARQAAITNEILEIVGGAEAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CORGL (ATP synthase gamma chain OS=Corynebacterium glutamicum GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  234 EGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 542
            E ++    + +  + GE+ P   FE D   +L+A++P Y++ ++   F E+ A+E A+R + M   TDNA EL K+LS   NQ RQ +IT E+ EIV GA AL
Sbjct:  216 EDEIFEKGEDLLSSSGEVEPDYEFEPDADTLLEALLPQYVSRRLFSIFLEAAAAESASRRNAMKSATDNATELVKDLSRVANQARQAQITQEITEIVGGAGAL 318          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ARTS2 (ATP synthase gamma chain OS=Arthrobacter sp. (strain FB24) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = -1
Query:  234 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 503
            ++ +L PL  FE +  Q+LDA++P Y+ S+I  A  ++ ASE+AAR   M    DNA +L K  +   N  RQ +IT EL EIVAGA+AL
Sbjct:  205 SESDLLPLYEFEPETEQVLDALLPRYIESRIFAAMLQAAASELAARQRAMKSAGDNATDLIKKYTRLRNTARQAEITQELSEIVAGADAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_AGRVS (ATP synthase gamma chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D A IL  ++P  +  QI RA  E+ A E+ A+MS M   T NA E+   L+++YN++RQ KIT EL+EI+AGAEAL
Sbjct:  214 YEPDAASILSDLIPRNIAVQIFRALLENAAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAKITTELIEIIAGAEAL 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG2_PHOPR (ATP synthase gamma chain 2 OS=Photobacterium profundum GN=atpG2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  IL+A+M  Y+ SQ+ +   ES A E AARM  M   TDNA ++  +L + YN+ RQ  IT EL EIVAGA+A+
Sbjct:  211 IYEPDPKDILNALMLRYIESQVYQGTVESIACEQAARMVAMKSATDNAGDIINDLQLVYNKARQSAITQELSEIVAGAQAV 291          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_THEFY3.527e-1345.05ATP synthase gamma chain OS=Thermobifida fusca (st... [more]
ATPG_SHEFN3.527e-1345.68ATP synthase gamma chain OS=Shewanella frigidimari... [more]
ATPG_NATTJ3.527e-1346.84ATP synthase gamma chain OS=Natranaerobius thermop... [more]
ATPG_HAEIG3.527e-1348.15ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_HAEIE3.527e-1348.15ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_FLAJ13.527e-1345.68ATP synthase gamma chain OS=Flavobacterium johnson... [more]
ATPG_CORGL3.527e-1339.81ATP synthase gamma chain OS=Corynebacterium glutam... [more]
ATPG_ARTS23.527e-1345.56ATP synthase gamma chain OS=Arthrobacter sp. (stra... [more]
ATPG_AGRVS3.527e-1348.75ATP synthase gamma chain OS=Agrobacterium vitis (s... [more]
ATPG2_PHOPR3.527e-1348.15ATP synthase gamma chain 2 OS=Photobacterium profu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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