CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHISN (ATP synthase gamma chain OS=Rhizobium sp. (strain NGR234) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D A IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA E+   L++ YN++RQ +IT EL+EI++GAEAL
Sbjct:  214 YEPDAAAILTDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLNYNRQRQAQITKELIEIISGAEAL 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEU5 (ATP synthase gamma chain OS=Pseudomonas stutzeri (strain A1501) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  Q+LDA++  ++ SQ+ +A  E+ A+E AARM  M   TDNA EL  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  208 LYEPDAQQLLDALLVRFIESQVYQAVVENGAAEQAARMIAMKNATDNAGELISDLQLVYNKARQAAITQEISEIVGGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEPK (ATP synthase gamma chain OS=Pseudomonas putida (strain KT2440) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L K L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLIKELQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEPG (ATP synthase gamma chain OS=Pseudomonas putida (strain GB-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L K L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLIKELQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEP1 (ATP synthase gamma chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D  ++LD +M  Y+ SQ+ +A  E+ A+E AARM  M   TDNA +L K L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  206 LYEPDAKELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLIKELQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PSEA6 (ATP synthase gamma chain OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP  ILD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA +L  +L + YN+ RQ  IT E+ EIV+GA A+
Sbjct:  206 IYEPDPKPILDTLLVRYIESQVYQGVVENAASEQAARMVAMKAATDNAGDLIDDLQLIYNKARQAAITQEISEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PASMU (ATP synthase gamma chain OS=Pasteurella multocida GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E D   +LD ++  Y+ SQ+ +A  E+ ASE AARM  M   TDNA  L   L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 IYEPDAKVLLDNLLVRYLESQVYQAAVENLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PARL1 (ATP synthase gamma chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D  +IL  ++P  ++ QI RA  E+ A E  A+MS M   T NA ++ K L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  215 YEPDEGEILKDILPRNLSVQIFRALLENVAGEFGAKMSAMDNATRNAGDMIKKLNITYNRSRQAMITKELIEIISGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  234 MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 479
            M FE +   IL+ ++P  +  QI RA  E+ ASE  ARMS M   T NA E+ K  ++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  215 MEFEPNEETILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  234 MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 479
            M FE +   IL+ ++P  +  QI RA  E+ ASE  ARMS M   T NA E+ K  ++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  215 MEFEPNEETILETLLPKNLTVQIFRALLENAASEQGARMSAMDSATRNAGEMIKKQTLIYNRTRQAMITKELIEIISGAEAL 296          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_RHISN2.985e-1246.25ATP synthase gamma chain OS=Rhizobium sp. (strain ... [more]
ATPG_PSEU52.985e-1246.91ATP synthase gamma chain OS=Pseudomonas stutzeri (... [more]
ATPG_PSEPK2.985e-1246.91ATP synthase gamma chain OS=Pseudomonas putida (st... [more]
ATPG_PSEPG2.985e-1246.91ATP synthase gamma chain OS=Pseudomonas putida (st... [more]
ATPG_PSEP12.985e-1246.91ATP synthase gamma chain OS=Pseudomonas putida (st... [more]
ATPG_PSEA62.985e-1245.68ATP synthase gamma chain OS=Pseudoalteromonas atla... [more]
ATPG_PASMU2.985e-1246.91ATP synthase gamma chain OS=Pasteurella multocida ... [more]
ATPG_PARL12.985e-1245.00ATP synthase gamma chain OS=Parvibaculum lavamenti... [more]
ATPG_METEP2.985e-1247.56ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METC42.985e-1247.56ATP synthase gamma chain OS=Methylobacterium chlor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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