CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIBPA (ATP synthase gamma chain OS=Vibrio parahaemolyticus GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LD ++  Y+ SQ+ +   E+ A E AARM  M   TDNA  L ++L + YN+ RQ  IT EL EIV GA A+
Sbjct:  208 IYEPEPKPLLDTLLVRYVESQVYQGVVENLACEQAARMIAMKAATDNATNLIEDLELVYNKARQAAITQELSEIVGGASAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SOLUE (ATP synthase gamma chain OS=Solibacter usitatus (strain Ellin6076) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  237 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 476
            +FE+ PA +L+ ++P Y+  +  RA  ES ASE AARM+ M   T NA E+   L++  N+ RQ  IT E++E+V+GA A
Sbjct:  205 IFEEPPADMLNILLPKYVEMEFYRALLESAASEHAARMTAMDSATSNAAEMIDKLTLYMNRVRQASITKEIIEVVSGAAA 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SILPO (ATP synthase gamma chain OS=Silicibacter pomeroyi GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +GE   + LF+ +P++  IL  ++P  + +QI  A  E+ ASE  ARMS M   T NA E+   L++ +N+ RQ  IT EL+EI++GAEAL
Sbjct:  201 EGESDEVALFDYEPSEEAILADLLPRGVATQIFSALLENGASEQGARMSAMDNATRNAGEMIDKLTIEFNRSRQAVITNELIEIISGAEAL 291          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LISW6 (ATP synthase gamma chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y+ S I  A  ++ A+E AARM+ M   TDNA +L  +LS+ YN+ RQ  IT E+ EIV GA AL
Sbjct:  210 FEPSEQEILEVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITEIVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LISMO (ATP synthase gamma chain OS=Listeria monocytogenes GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y+ S I  A  ++ A+E AARM+ M   TDNA +L  +LS+ YN+ RQ  IT E+ EIV GA AL
Sbjct:  210 FEPSEQEILEVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITEIVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LISMH (ATP synthase gamma chain OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y+ S I  A  ++ A+E AARM+ M   TDNA +L  +LS+ YN+ RQ  IT E+ EIV GA AL
Sbjct:  210 FEPSEQEILEVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITEIVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LISMF (ATP synthase gamma chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y+ S I  A  ++ A+E AARM+ M   TDNA +L  +LS+ YN+ RQ  IT E+ EIV GA AL
Sbjct:  210 FEPSEQEILEVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITEIVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LISMC (ATP synthase gamma chain OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y+ S I  A  ++ A+E AARM+ M   TDNA +L  +LS+ YN+ RQ  IT E+ EIV GA AL
Sbjct:  210 FEPSEQEILEVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITEIVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LISIN (ATP synthase gamma chain OS=Listeria innocua GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            FE    +IL+ ++P Y+ S I  A  ++ A+E AARM+ M   TDNA +L  +LS+ YN+ RQ  IT E+ EIV GA AL
Sbjct:  210 FEPSEQEILEVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAITQEITEIVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAMD5 (ATP synthase gamma chain OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E +P  +LD ++  Y+ SQ+ +   E+ +SE AARM  M   TDN   L   L + YN+ RQ  IT EL EIV GA AL
Sbjct:  209 LYEPEPKVLLDTLLRRYIESQVYQGVVENISSEQAARMVAMKAATDNGGNLIDELQLIYNKARQASITQELTEIVGGASAL 289          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_VIBPA1.482e-1143.21ATP synthase gamma chain OS=Vibrio parahaemolyticu... [more]
ATPG_SOLUE1.482e-1143.75ATP synthase gamma chain OS=Solibacter usitatus (s... [more]
ATPG_SILPO1.482e-1142.86ATP synthase gamma chain OS=Silicibacter pomeroyi ... [more]
ATPG_LISW61.482e-1146.25ATP synthase gamma chain OS=Listeria welshimeri se... [more]
ATPG_LISMO1.482e-1146.25ATP synthase gamma chain OS=Listeria monocytogenes... [more]
ATPG_LISMH1.482e-1146.25ATP synthase gamma chain OS=Listeria monocytogenes... [more]
ATPG_LISMF1.482e-1146.25ATP synthase gamma chain OS=Listeria monocytogenes... [more]
ATPG_LISMC1.482e-1146.25ATP synthase gamma chain OS=Listeria monocytogenes... [more]
ATPG_LISIN1.482e-1146.25ATP synthase gamma chain OS=Listeria innocua GN=at... [more]
ATPG_HAMD51.482e-1144.44ATP synthase gamma chain OS=Hamiltonella defensa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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