CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ENTFA (ATP synthase gamma chain OS=Enterococcus faecalis GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L E  P  ILD ++P Y  S I  A  ++  +E AA M+ M   TDNA  +  +L+++YN+ RQG IT E+ EIVAGA AL
Sbjct:  221 LLEPSPEAILDQLLPQYAESLIYGAIIDAKTAEHAAGMTAMKTATDNAQNIISDLTISYNRARQGAITQEITEIVAGAAAL 301          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ANASK (ATP synthase gamma chain OS=Anaeromyxobacter sp. (strain K) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  234 FEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            F+ +P++  +L  ++P ++  Q+ RA  ES ASE  ARMS M   T NA+E+  +LS+ YN+ RQ  +T EL+EIV GAEAL
Sbjct:  208 FKYEPSREALLAELLPRHVAMQVWRALLESAASEHGARMSAMESATKNAEEMIASLSLQYNRARQAYVTKELMEIVGGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ANAD2 (ATP synthase gamma chain OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  234 FEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            F+ +P++  +L  ++P ++  Q+ RA  ES ASE  ARMS M   T NA+E+  +LS+ YN+ RQ  +T EL+EIV GAEAL
Sbjct:  208 FKYEPSREALLAELLPRHVAMQVWRALLESAASEHGARMSAMESATKNAEEMIASLSLQYNRARQAYVTKELMEIVGGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VARPS (ATP synthase gamma chain OS=Variovorax paradoxus (strain S110) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  237 VARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 527
            +A DS+    G+ S   ++E D   ++D ++  Y+ S + +A  E+ ASE +ARM  M   TDNA  +   L + YN+ RQ  IT EL EIV+GA A
Sbjct:  191 LAADSLQVEAGQHSWDYIYEPDAQSVIDELLVRYVESLVYQAVAENMASEHSARMVAMKAATDNAGNVINELKLVYNKTRQAGITKELSEIVSGAAA 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ROSCS (ATP synthase gamma chain OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  228 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 473
            +E    ++L A++P ++  Q+ +A  E+ ASE +ARM  M   TDNA EL+++L+++YN+ RQ  IT E+ EI +GA AL +
Sbjct:  208 YEPSQEEVLRALLPRFVEVQLYQAVLEAIASEHSARMVAMRNATDNAKELQRDLTLSYNKTRQANITKEVSEIASGAAALAE 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHOSK (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +GE+S L  +E     +L  ++P  + +QI  A  E+ ASE  ARMS M   T NA ++   L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  201 EGEVSSLYDYEPSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS4 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +GE+S L  +E     +L  ++P  + +QI  A  E+ ASE  ARMS M   T NA ++   L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  201 EGEVSSLYDYEPSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS1 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +GE+S L  +E     +L  ++P  + +QI  A  E+ ASE  ARMS M   T NA ++   L++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  201 EGEVSSLYDYEPSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEPBL (ATP synthase gamma chain OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +G  + L+++E  P ++L++++PL + +  L+A  E+  SE  AR   M   TD A E+ K L+  YN+ RQ KIT E+ EIVAGA++L
Sbjct:  197 EGNGNDLVVYEPSPERVLESLLPLVVKTAFLKAILEANCSEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVAGADSL 285          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_LEPBJ (ATP synthase gamma chain OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  234 KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 500
            +G  + L+++E  P ++L++++PL + +  L+A  E+  SE  AR   M   TD A E+ K L+  YN+ RQ KIT E+ EIVAGA++L
Sbjct:  197 EGNGNDLVVYEPSPERVLESLLPLVVKTAFLKAILEANCSEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVAGADSL 285          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_ENTFA1.482e-1145.68ATP synthase gamma chain OS=Enterococcus faecalis ... [more]
ATPG_ANASK1.482e-1146.34ATP synthase gamma chain OS=Anaeromyxobacter sp. (... [more]
ATPG_ANAD21.482e-1146.34ATP synthase gamma chain OS=Anaeromyxobacter dehal... [more]
ATPG_VARPS1.935e-1139.18ATP synthase gamma chain OS=Variovorax paradoxus (... [more]
ATPG_ROSCS1.935e-1141.46ATP synthase gamma chain OS=Roseiflexus castenholz... [more]
ATPG_RHOSK1.935e-1142.70ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHOS41.935e-1142.70ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHOS11.935e-1142.70ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_LEPBL1.935e-1140.45ATP synthase gamma chain OS=Leptospira borgpeterse... [more]
ATPG_LEPBJ1.935e-1140.45ATP synthase gamma chain OS=Leptospira borgpeterse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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