CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_DESHD (ATP synthase gamma chain OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            +FE    +IL  ++P Y+ +Q+ R   E  ASE+ A+M+ M   TDNA E  + L++  N+ RQ  IT E+ EIV GA AL
Sbjct:  200 IFEPSAEEILTTLLPKYVETQVFRTLLEGKASEMGAKMTAMGAATDNAKEAIERLTLQLNRARQAAITTEISEIVGGASAL 280          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CLOPS (ATP synthase gamma chain OS=Clostridium perfringens (strain SM101 / Type A) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  237 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 512
            +T  KG++S   L E D  +I+D+++  Y+  + + A   S ASE +ARM  M   T NAD+L  +L   YN+ RQ  IT E+ EIV GAEA
Sbjct:  192 LTGEKGKVS--FLIEPDEDEIIDSLVSSYLKGKFMNAMFNSKASEQSARMQAMDGATKNADDLLNSLDAKYNRIRQSIITQEISEIVGGAEA 281          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CLOPE (ATP synthase gamma chain OS=Clostridium perfringens GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  237 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 512
            +T  KG++S   L E D  +I+D+++  Y+  + + A   S ASE +ARM  M   T NAD+L  +L   YN+ RQ  IT E+ EIV GAEA
Sbjct:  192 LTGEKGKVS--FLIEPDEDEIIDSLVSSYLKGKFMNAMFNSKASEQSARMQAMDGATKNADDLLNSLDAKYNRIRQSIITQEISEIVGGAEA 281          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CLOP1 (ATP synthase gamma chain OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  237 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 512
            +T  KG++S   L E D  +I+D+++  Y+  + + A   S ASE +ARM  M   T NAD+L  +L   YN+ RQ  IT E+ EIV GAEA
Sbjct:  192 LTGEKGKVS--FLIEPDEDEIIDSLVSSYLKGKFMNAMFNSKASEQSARMQAMDGATKNADDLLNSLDAKYNRIRQSIITQEISEIVGGAEA 281          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRASO (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain ORS278) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  234 SPLMLFEQDPAQ--ILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 488
            +P+ L+E +P +  IL A++P  +  QI RA  E+ AS   A+MS M   T NA E+ +  ++ YN+ RQ  IT EL+EI++GAEA+
Sbjct:  206 APVALYEYEPEEDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAV 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BIFLO (ATP synthase gamma chain OS=Bifidobacterium longum GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  228 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 494
            +++PL  FE    ++LDA++P Y+ S+I      + ASE A+R + M   TDNA  L  +L+   N  RQ  IT EL EI+  A+ALT+
Sbjct:  216 DVAPLYTFEPSLEKVLDAILPKYIQSRIHECLLTAAASETASRQNAMHTATDNARNLIDDLTRKLNASRQASITQELTEIIGSADALTK 304          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BIFLD (ATP synthase gamma chain OS=Bifidobacterium longum (strain DJO10A) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  228 ELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 494
            +++PL  FE    ++LDA++P Y+ S+I      + ASE A+R + M   TDNA  L  +L+   N  RQ  IT EL EI+  A+ALT+
Sbjct:  216 DVAPLYTFEPSLEKVLDAILPKYIQSRIHECLLTAAASETASRQNAMHTATDNARNLIDDLTRKLNASRQASITQELTEIIGSADALTK 304          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ANADE (ATP synthase gamma chain OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E     +L  ++P ++  Q+ RA  ES ASE  ARMS M   T NA+E+  +LS+ YN+ RQ  +T EL EIV+GAEAL
Sbjct:  210 YEPSREALLADLLPRHVAMQVWRALLESAASEHGARMSAMESATKNAEEMIASLSLQYNRARQAYVTKELSEIVSGAEAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_STRMK (ATP synthase gamma chain OS=Stenotrophomonas maltophilia (strain K279a) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA++L   L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  207 LYEPDAATVLEHVMTRYIESLVYQALLENVASEHAARMVAMKAASDNANKLIGTLQLVYNKARQAAITQEISEIVGGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_STRM5 (ATP synthase gamma chain OS=Stenotrophomonas maltophilia (strain R551-3) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA++L  +L + YN+ RQ  IT E+ EIV GA A+
Sbjct:  207 LYEPDAATVLEHVMTRYIESLVYQALLENVASEHAARMVAMKSASDNANKLIGDLQLVYNKARQAAITQEISEIVGGAAAV 287          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_DESHD5.630e-1141.98ATP synthase gamma chain OS=Desulfitobacterium haf... [more]
ATPG_CLOPS5.630e-1142.39ATP synthase gamma chain OS=Clostridium perfringen... [more]
ATPG_CLOPE5.630e-1142.39ATP synthase gamma chain OS=Clostridium perfringen... [more]
ATPG_CLOP15.630e-1142.39ATP synthase gamma chain OS=Clostridium perfringen... [more]
ATPG_BRASO5.630e-1142.53ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_BIFLO5.630e-1140.45ATP synthase gamma chain OS=Bifidobacterium longum... [more]
ATPG_BIFLD5.630e-1140.45ATP synthase gamma chain OS=Bifidobacterium longum... [more]
ATPG_ANADE5.630e-1146.25ATP synthase gamma chain OS=Anaeromyxobacter dehal... [more]
ATPG_STRMK7.353e-1144.44ATP synthase gamma chain OS=Stenotrophomonas malto... [more]
ATPG_STRM57.353e-1144.44ATP synthase gamma chain OS=Stenotrophomonas malto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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