CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ACISJ (ATP synthase gamma chain OS=Acidovorax sp. (strain JS42) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E D   ++D ++  Y+ S I +A  E+ ASE +ARM  M   TDNA  +   L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  208 IYEPDAQSVIDELLVRYVESLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XANOR (ATP synthase gamma chain OS=Xanthomonas oryzae pv. oryzae GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA+++   L + YN+ RQ  IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XANOP (ATP synthase gamma chain OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA+++   L + YN+ RQ  IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XANOM (ATP synthase gamma chain OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA+++   L + YN+ RQ  IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_XANAC (ATP synthase gamma chain OS=Xanthomonas axonopodis pv. citri GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E D A +L+ +M  Y+ S + +A  E+ ASE AARM  M   +DNA+++   L + YN+ RQ  IT E+ EIV+GA A+
Sbjct:  207 LYEPDAASVLEHVMTRYIESLVYQAVLENVASEHAARMVAMKAASDNANKMIGTLQLVYNKARQAAITQEISEIVSGAAAV 287          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SACD2 (ATP synthase gamma chain OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +  ++LD ++  Y+ SQ+ +A  E+ A E AARM  M   TDNA +L   L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 IYEPEARELLDGLLVRYIESQVYQAVVENGACEQAARMIAMKNATDNAGDLIDGLQLVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PHEZH (ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1) GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D  QIL+ ++P  + +Q+L A  E+ A   AA+M+ M   T NA ++  +L++ YN+ RQ +IT EL+EI++GAEAL
Sbjct:  211 YEPDEEQILETLLPRNVTTQLLSATLENQAGFYAAQMTAMDNATRNAGDMIASLTLQYNRSRQAQITKELIEIISGAEAL 290          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MOOTA (ATP synthase gamma chain OS=Moorella thermoacetica (strain ATCC 39073) GN=atpG PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E  P  +L  ++P Y   ++ RA  E+ ASE  ARM+ M   T NA E+    ++++N+ RQ  IT E++EIVAGA+AL
Sbjct:  201 IYEPSPEAVLRVLLPRYCEIKVYRALLEAKASEHGARMTAMDNATKNAAEMIDKFTLSFNRARQAAITNEIVEIVAGADAL 281          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CYTH3 (ATP synthase gamma chain OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            +FE    +I+  ++P  +  Q  +   ES ASE  ARM+ M   T+NA E+ K L + YN+ RQ  IT E+LEIV GAEAL
Sbjct:  213 IFEPSKEEIVKELIPKSLKVQFYKYLLESNASEHGARMTAMDKATENAKEMLKALKLTYNRSRQAAITKEILEIVGGAEAL 293          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_COLMA (ATP synthase gamma chain OS=Colwellia maris GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E D   +LD ++  Y+ SQ+ +   E+ A E A+RM  M   TDNA +L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  206 IYEPDANSLLDQLLVRYIESQVYQGVVENIACEQASRMVSMKAATDNAGDLIDDLQLVYNKARQAAITQELGEIVAGAAAV 286          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_ACISJ7.353e-1143.21ATP synthase gamma chain OS=Acidovorax sp. (strain... [more]
ATPG_XANOR9.604e-1143.21ATP synthase gamma chain OS=Xanthomonas oryzae pv.... [more]
ATPG_XANOP9.604e-1143.21ATP synthase gamma chain OS=Xanthomonas oryzae pv.... [more]
ATPG_XANOM9.604e-1143.21ATP synthase gamma chain OS=Xanthomonas oryzae pv.... [more]
ATPG_XANAC9.604e-1143.21ATP synthase gamma chain OS=Xanthomonas axonopodis... [more]
ATPG_SACD29.604e-1143.21ATP synthase gamma chain OS=Saccharophagus degrada... [more]
ATPG_PHEZH9.604e-1142.50ATP synthase gamma chain OS=Phenylobacterium zucin... [more]
ATPG_MOOTA9.604e-1140.74ATP synthase gamma chain OS=Moorella thermoacetica... [more]
ATPG_CYTH39.604e-1144.44ATP synthase gamma chain OS=Cytophaga hutchinsonii... [more]
ATPG_COLMA9.604e-1143.21ATP synthase gamma chain OS=Colwellia maris GN=atp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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