CF831928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 7.867e-12 Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RK +TP G Sbjct: 216 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPTTPWG 255 HSP 2 Score: 41.5874 bits (96), Expect = 7.867e-12 Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K P WGY AL RRSRK+NKY+D+LIL Sbjct: 248 KNPTTPWGYPALGRRSRKRNKYSDSLIL 275
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248 HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY++NLIL Sbjct: 241 KKPATPWGYPALGRRSRKRNKYSENLIL 268
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248 HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY++NLIL Sbjct: 241 KKPATPWGYPALGRRSRKRNKYSENLIL 268
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2) HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248 HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY++NLIL Sbjct: 241 KKPATPWGYPALGRRSRKRNKYSENLIL 268
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248 HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY++NLIL Sbjct: 241 KKPATPWGYPALGRRSRKRNKYSENLIL 268
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 7.876e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 248 HSP 2 Score: 42.743 bits (99), Expect = 7.876e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY++NLIL Sbjct: 241 KKPATPWGYPALGRRSRKRNKYSENLIL 268
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 1.022e-11 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 1.022e-11 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 1.022e-11 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 1.022e-11 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_ATRBE (50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna GN=rpl2-B PE=3 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 1.022e-11 Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +++ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVNHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 1.022e-11 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.023e-11 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 39.2762 bits (90), Expect = 1.023e-11 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D IL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDIFIL 269 The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bpback to top |