CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SALEP (ATP synthase gamma chain OS=Salmonella enteritidis PT4 (strain P125109) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SALDC (ATP synthase gamma chain OS=Salmonella dublin (strain CT_02021853) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SALCH (ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SALAR (ATP synthase gamma chain OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SALA4 (ATP synthase gamma chain OS=Salmonella agona (strain SL483) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RHISN (ATP synthase gamma chain OS=Rhizobium sp. (strain NGR234) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  235 LTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 555
            +  + G +  E DS        S +  +E D A IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA E+   L++ YN++RQA+IT EL+EI++GAEAL
Sbjct:  194 IPASAGPVAAEADSA-------SAVYEYEPDAAAILTDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLNYNRQRQAQITKELIEIISGAEAL 293          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PHOLL (ATP synthase gamma chain OS=Photorhabdus luminescens subsp. laumondii GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDILLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGASAV 287          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_LEPBP (ATP synthase gamma chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  232 TFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 510
            T +KG   P +L+E DP  IL+ ++P+ + +  ++ + ES ASE  AR  AM  ATD A E+ K L+  YN+ RQAKIT E+ EIV GAEA++
Sbjct:  197 TGSKGSSGPEVLYEPDPKTILENLLPMVIKTTFVKIILESVASEHIARRVAMKAATDAAGEMIKLLTRGYNRVRQAKITQEISEIVGGAEAIS 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_LEPBA (ATP synthase gamma chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  232 TFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 510
            T +KG   P +L+E DP  IL+ ++P+ + +  ++ + ES ASE  AR  AM  ATD A E+ K L+  YN+ RQAKIT E+ EIV GAEA++
Sbjct:  197 TGSKGSSGPEVLYEPDPKTILENLLPMVIKTTFVKIILESVASEHIARRVAMKAATDAAGEMIKLLTRGYNRVRQAKITQEISEIVGGAEAIS 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_KLEP7 (ATP synthase gamma chain OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            L+E DP  +LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDN   L K L + YN+ RQA IT EL EIV+GA A+
Sbjct:  207 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_SALEP8.500e-1550.62ATP synthase gamma chain OS=Salmonella enteritidis... [more]
ATPG_SALDC8.500e-1550.62ATP synthase gamma chain OS=Salmonella dublin (str... [more]
ATPG_SALCH8.500e-1550.62ATP synthase gamma chain OS=Salmonella choleraesui... [more]
ATPG_SALAR8.500e-1550.62ATP synthase gamma chain OS=Salmonella arizonae (s... [more]
ATPG_SALA48.500e-1550.62ATP synthase gamma chain OS=Salmonella agona (stra... [more]
ATPG_RHISN8.500e-1542.99ATP synthase gamma chain OS=Rhizobium sp. (strain ... [more]
ATPG_PHOLL8.500e-1550.62ATP synthase gamma chain OS=Photorhabdus luminesce... [more]
ATPG_LEPBP8.500e-1546.24ATP synthase gamma chain OS=Leptospira biflexa ser... [more]
ATPG_LEPBA8.500e-1546.24ATP synthase gamma chain OS=Leptospira biflexa ser... [more]
ATPG_KLEP78.500e-1550.62ATP synthase gamma chain OS=Klebsiella pneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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