CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMP (ATP synthase gamma chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT   K++VE+ ++  N  +  P  ++FEQ P Q+LD+++PLY+ +QILRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKNSKLLVEKSNIEKNDSDKLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM5 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9515) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26
Identity = 58/110 (52.73%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT   K++VE+ ++  N+ +  P  ++FEQ P Q+LD+++PLY+ +QILRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKNSKLLVEKSNLEKNESDRLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROMS (ATP synthase gamma chain OS=Prochlorococcus marinus (strain AS9601) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 57/110 (51.82%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM9 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9312) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 57/110 (51.82%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM2 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9215) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 57/110 (51.82%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROM0 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9301) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 57/110 (51.82%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  244 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 570
            DE+FRLTT + K++VE+ ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRALQES ASE+A RM+AM+ A+DNA EL   L++ YN+ RQA IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS3 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9311) GN=atpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE+FRLTT EG++ VE  S   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+LQES ASE+A+RM+AM+ A+DNA EL K L++ YN+ RQA IT E+LE+V G+ A
Sbjct:  203 DEIFRLTTKEGRLSVEAGSAPENSQPALPSDIVFEQSPDQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PHATR (ATP synthase gamma chain, chloroplastic OS=Phaeodactylum tricornutum GN=ATPC PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 61/113 (53.98%), Postives = 83/113 (73.45%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+F+LT+  G+  VER  +     +  P  M+FEQDP QI++A++PLY+N QILR LQES ASE+AARM +M +A+DNA  L K L++ YN+ RQA +T ELLEI++GA AL
Sbjct:  257 DEVFQLTSESGQFGVERTELDVAAPQEFPNDMIFEQDPIQIVNAILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGSLAKQLNLEYNRARQAAVTQELLEIISGASAL 369          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ODOSI (ATP synthase gamma chain, chloroplastic OS=Odontella sinensis GN=ATPC PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+F+LT++ G   VER  +   + +  P  M+FEQDP QI+++++PLY+N QILR LQES ASE+AARM +M +A+DNA +L K LS  YN+ RQA +T E+LEIV+GA AL
Sbjct:  257 DEVFQLTSSGGDFEVERTELEVAEPQDFPNDMIFEQDPIQIINSILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGDLAKRLSTEYNRARQAAVTQEILEIVSGASAL 369          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPW (ATP synthase gamma chain OS=Synechococcus sp. (strain WH7803) GN=atpG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 59/113 (52.21%), Postives = 85/113 (75.22%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFN-KGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE+FRLTT +G + VE  S   N + ELS  ++FEQ P Q+L+A++PLY+ +Q+LR+LQE+ ASE+A+RM+AM+ A+DNA  L K L++ YN+ RQA IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGDLRVETGSAPANAQPELSSEIVFEQSPDQLLNALLPLYLQNQVLRSLQEAAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_PROMP3.679e-2652.73ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM53.679e-2652.73ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMS4.804e-2651.82ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM94.804e-2651.82ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM24.804e-2651.82ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM04.804e-2651.82ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNS38.195e-2653.57ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PHATR1.070e-2553.98ATP synthase gamma chain, chloroplastic OS=Phaeoda... [more]
ATPG_ODOSI1.070e-2553.98ATP synthase gamma chain, chloroplastic OS=Odontel... [more]
ATPG_SYNPW3.114e-2552.21ATP synthase gamma chain OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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