CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLL2 (ATP synthase gamma chain OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.549e-16
Identity = 42/81 (51.85%), Postives = 63/81 (77.78%), Query Frame = -1
Query:  235 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 477
            ++E  PA I+D ++P ++++Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGA+AL
Sbjct:  209 IYEPSPAVIIDELVPKHLSTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADAL 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PROVI (ATP synthase gamma chain OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = -1
Query:  235 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 504
            N+G+     ++E  P+ I+  ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIV GA+AL
Sbjct:  200 NEGDRGGDYIYEPSPSAIISELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVGGADAL 289          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RHILW (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL+ ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA E+   L+++YN++RQA+IT EL+EI++GAEAL
Sbjct:  215 YEPDPASILEDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_RHIL3 (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL+ ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA E+   L+++YN++RQA+IT EL+EI++GAEAL
Sbjct:  215 YEPDPASILEDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_OCHA4 (ATP synthase gamma chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSU (ATP synthase gamma chain OS=Brucella suis GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSI (ATP synthase gamma chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUO2 (ATP synthase gamma chain OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUME (ATP synthase gamma chain OS=Brucella melitensis GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_BRUMB (ATP synthase gamma chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  235 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 474
            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_CHLL21.549e-1651.85ATP synthase gamma chain OS=Chlorobium limicola (s... [more]
ATPG_PROVI2.023e-1646.67ATP synthase gamma chain OS=Prosthecochloris vibri... [more]
ATPG_RHILW2.642e-1652.50ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_RHIL32.642e-1652.50ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_OCHA42.642e-1652.50ATP synthase gamma chain OS=Ochrobactrum anthropi ... [more]
ATPG_BRUSU2.642e-1652.50ATP synthase gamma chain OS=Brucella suis GN=atpG ... [more]
ATPG_BRUSI2.642e-1652.50ATP synthase gamma chain OS=Brucella suis (strain ... [more]
ATPG_BRUO22.642e-1652.50ATP synthase gamma chain OS=Brucella ovis (strain ... [more]
ATPG_BRUME2.642e-1652.50ATP synthase gamma chain OS=Brucella melitensis GN... [more]
ATPG_BRUMB2.642e-1652.50ATP synthase gamma chain OS=Brucella melitensis bi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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