CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_MICLC (ATP synthase gamma chain OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 2
Query:   41 IVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +VE ++ T    ++ PL  +E D  ++LDA++P Y+ S+I  A+ +S ASE+A R  AM +A DNA  L K+ ++  N  RQA+IT EL E++AGA+AL
Sbjct:  198 VVEEEAATAE--DVLPLYEYEPDAEEVLDALLPKYIESRIFNAMLQSAASELANRQRAMKSAGDNATSLIKDYTLLMNNARQAEITQELTELIAGADAL 294          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   98 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +E +  +IL A++P  +  QILRAL E+ ASE  ARMSAM +AT NA E+ K  ++ YN+ RQA IT EL+EI++GAEAL
Sbjct:  213 YEPEEGEILAALLPKNLTVQILRALLENAASEQGARMSAMDSATRNAGEMIKKQTLVYNRTRQAMITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_HAEI8 (ATP synthase gamma chain OS=Haemophilus influenzae (strain 86-028NP) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            L+E +P  +LD+++  Y+ SQI +A+ ++ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIVAGA A+
Sbjct:  209 LYEPEPKALLDSLLVRYLESQIYQAVVDNLASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSW (ATP synthase gamma chain OS=Geobacillus sp. (strain WCH70) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   98 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            FE    +ILD ++P Y  S I  AL ++ ASE AARM+AM  ATDNA EL + L+++YN+ RQA IT E+ EIVAGA AL
Sbjct:  205 FEPSQEEILDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNAHELIRTLTLSYNRARQAAITQEITEIVAGANAL 284          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_FLAJ1 (ATP synthase gamma chain OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +FE    +I+  ++P  + +Q+ + +++SFASE  ARM+AM  ATDNA EL+  L + YN+ RQA IT E+LEIV GAEAL
Sbjct:  204 IFEPSKEEIVLTLIPKSLKTQLYKGIRDSFASEHGARMTAMHKATDNATELRNQLKLTYNKARQAAITNEILEIVGGAEAL 284          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CORGL (ATP synthase gamma chain OS=Corynebacterium glutamicum GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            LP+    E ++  + + +  + GE+ P   FE D   +L+A++P Y++ ++     E+ A+E A+R +AM +ATDNA EL K+LS   NQ RQA+IT E+ EIV GA AL
Sbjct:  209 LPVEPVIEDEIFEKGEDLLSSSGEVEPDYEFEPDADTLLEALLPQYVSRRLFSIFLEAAAAESASRRNAMKSATDNATELVKDLSRVANQARQAQITQEITEIVGGAGAL 318          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CORDI (ATP synthase gamma chain OS=Corynebacterium diphtheriae GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            LP+    E   I E D +    GE +P + FE D   +L+A++P Y++  +     E+ A+E A+R +AM +ATDNA  L K+LS   NQ RQA+IT E+ EIV GA AL
Sbjct:  209 LPIEPVIETVEIPEADGILDQSGEPTPDVEFEPDADTLLEALLPQYVSRSLFAMFLEAAAAESASRRNAMKSATDNATALVKDLSRVANQARQAQITQEITEIVGGASAL 318          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BARQU (ATP synthase gamma chain OS=Bartonella quintana GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 2
Query:   35 KMIVERDSVTF----NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            K  VE + VT     NK   S +  +E D A +L+ ++P  ++ QI +AL E+ A E+ A+++AM  A+ NA E+   L+VAYN++RQA+IT EL+EI+AGAEAL
Sbjct:  199 KGAVEAEDVTQKVDENKNLQSIVYDYEPDVASLLEELVPRNLSVQIFQALLENVAGEMGAKVTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 303          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BACA2 (ATP synthase gamma chain OS=Bacillus amyloliquefaciens (strain FZB42) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   98 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            FE D  ++L+ ++P Y  S I  AL +S ASE AARM+AM  ATDNA EL  +LS++YN+ RQA IT E+ EIV GA AL
Sbjct:  207 FEPDEEEVLEVLLPQYAESLIYGALLDSKASEHAARMTAMKNATDNAKELIDSLSLSYNRARQAAITQEITEIVGGAAAL 286          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_AERS4 (ATP synthase gamma chain OS=Aeromonas salmonicida (strain A449) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++E DP Q+LD ++  Y+ SQ+ + + E+ ASE AARM AM  ATDNA  L  +L + YN+ RQA IT EL EIV+GA A+
Sbjct:  208 IYEPDPKQLLDTLLIRYVESQVYQGVVENLASEQAARMVAMQAATDNAGNLINDLQLVYNKARQASITQELTEIVSGAAAV 288          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_MICLC3.816e-1543.43ATP synthase gamma chain OS=Micrococcus luteus (st... [more]
ATPG_METNO3.816e-1553.75ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_HAEI83.816e-1551.85ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_GEOSW3.816e-1555.00ATP synthase gamma chain OS=Geobacillus sp. (strai... [more]
ATPG_FLAJ13.816e-1549.38ATP synthase gamma chain OS=Flavobacterium johnson... [more]
ATPG_CORGL3.816e-1540.91ATP synthase gamma chain OS=Corynebacterium glutam... [more]
ATPG_CORDI3.816e-1542.73ATP synthase gamma chain OS=Corynebacterium diphth... [more]
ATPG_BARQU3.816e-1544.76ATP synthase gamma chain OS=Bartonella quintana GN... [more]
ATPG_BACA23.816e-1555.00ATP synthase gamma chain OS=Bacillus amyloliquefac... [more]
ATPG_AERS43.816e-1550.62ATP synthase gamma chain OS=Aeromonas salmonicida ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
back to top