CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_KINRD (ATP synthase gamma chain OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   74 GELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            GEL PL  FE     +LDA++P Y+NS+I   L ++ ASE+AAR  AM +ATDNADEL K L+   N  RQA IT E+ EIV GA+AL
Sbjct:  208 GELQPLYEFEPSADAVLDALLPQYVNSRIYNCLLQAAASELAARQRAMKSATDNADELIKKLTRLANNARQADITQEISEIVGGADAL 295          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLTE (ATP synthase gamma chain OS=Chlorobium tepidum GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 45/83 (54.22%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 343
            L+E  PA I+D ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGA+AL Q
Sbjct:  210 LYEPSPAAIIDELVPKHLNTQLWRVMLESNAAEQAARMAAMDSATENAKELIRVLNISYNRARQAAITKELSEIVAGADALKQ 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLCH (ATP synthase gamma chain OS=Chlorobium chlorochromatii (strain CaD3) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 43/81 (53.09%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++E +PA I+D ++P ++ +Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGAEAL
Sbjct:  211 MYEPNPAAIIDVLLPKHLRTQVWRIMLESNAAEQAARMAAMDSATENAKELLRTLNISYNRARQAAITTELSEIVAGAEAL 291          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLT3 (ATP synthase gamma chain OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = 2
Query:   71 KGELSPLM--LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 343
            + +L P++  ++E  P  I++ ++P ++N+Q+ R L ES A+E A+RM+AM +ATDNA EL ++LS+ YN+ RQA IT E+LEIV GA AL Q
Sbjct:  210 QNKLVPIVDYIYEPSPEAIINELVPKHLNTQLWRVLLESNAAEQASRMTAMDSATDNAKELLRSLSITYNRARQAAITKEILEIVGGANALEQ 302          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BARHE (ATP synthase gamma chain OS=Bartonella henselae GN=atpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.077e-17
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLML-FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +PM+++       E +    N  +L  ++  +E D A +LD ++P  ++ QI RAL E+ A E+ A+M+AM  A+ NA E+   L+VAYN++RQA+IT EL+EI+AGAEAL
Sbjct:  193 VPMVSSGGAVETAEVEQKIDNSADLQSIVYDYEPDAASLLDVLVPRNLSVQIFRALLENVAGEMGAKMTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 303          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLP8 (ATP synthase gamma chain OS=Chlorobaculum parvum (strain NCIB 8327) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 343
            L+E  P  I+D ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGA+AL Q
Sbjct:  210 LYEPSPEAIIDELVPKHLNTQVWRVMLESNAAEQAARMAAMDSATENAKELIRVLNISYNRARQAAITKELSEIVAGADALKQ 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLL2 (ATP synthase gamma chain OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    2 DELPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            D LP+   N GK          N G+     ++E  PA I+D ++P ++++Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIVAGA+AL
Sbjct:  191 DLLPIAAENAGKD---------NSGDY----IYEPSPAVIIDELVPKHLSTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADAL 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_AMOA5 (ATP synthase gamma chain OS=Amoebophilus asiaticus (strain 5a2) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.324e-17
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 343
            ++E   A +++ ++P+ +  Q+ +AL ES ASE  ARM+ MS ATDNA+EL K+L + YN+ RQA IT E+LEI AGAEAL+Q
Sbjct:  208 IYEPSKASLVETLIPMTLKIQLYKALLESAASEHGARMTTMSKATDNAEELLKSLRITYNKTRQAAITNEILEIAAGAEALSQ 290          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLPD (ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain DSM 266) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++E  P  I+D ++P ++N+Q+ R + ES A+E AARMSAM +AT+NA EL + L+++YN+ RQA IT EL EIV GA+AL
Sbjct:  209 IYEPSPESIIDVLVPKHLNTQVWRVMLESNAAEQAARMSAMDSATENAKELLRTLNISYNRARQAAITKELSEIVGGADAL 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_HELMI (ATP synthase gamma chain OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.082e-17
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   86 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            PL  FE  P  +LD ++P Y+ +QI RAL ES ASE  ARM+AM +ATDNA E+   L++++N+ RQA IT E+ E+V GA AL
Sbjct:  206 PLYAFEPSPEAVLDELLPKYVENQIYRALLESKASEQGARMTAMGSATDNAKEMINKLTLSFNRARQAAITKEISEVVGGAAAL 289          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_KINRD1.830e-1754.55ATP synthase gamma chain OS=Kineococcus radiotoler... [more]
ATPG_CHLTE1.830e-1754.22ATP synthase gamma chain OS=Chlorobium tepidum GN=... [more]
ATPG_CHLCH3.121e-1753.09ATP synthase gamma chain OS=Chlorobium chlorochrom... [more]
ATPG_CHLT34.077e-1748.39ATP synthase gamma chain OS=Chloroherpeton thalass... [more]
ATPG_BARHE4.077e-1742.34ATP synthase gamma chain OS=Bartonella henselae GN... [more]
ATPG_CHLP85.324e-1753.01ATP synthase gamma chain OS=Chlorobaculum parvum (... [more]
ATPG_CHLL25.324e-1744.64ATP synthase gamma chain OS=Chlorobium limicola (s... [more]
ATPG_AMOA55.324e-1751.81ATP synthase gamma chain OS=Amoebophilus asiaticus... [more]
ATPG_CHLPD6.954e-1751.85ATP synthase gamma chain OS=Chlorobium phaeobacter... [more]
ATPG_HELMI9.082e-1752.38ATP synthase gamma chain OS=Heliobacterium modesti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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