CF831957

Overview
NameCF831957
Unique NameCF831957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_RHIE6 (ATP synthase gamma chain OS=Rhizobium etli (strain CIAT 652) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 43/80 (53.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   98 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +E DPA ILD ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA E+   L+++YN++RQA+IT EL+EI++GAEAL
Sbjct:  215 YEPDPAAILDDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_CHLPB (ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain BS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   95 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            ++E  P+ I+D ++P ++N+QI R + ES A+E A+RM+AM +AT+NA EL + L ++YN+ RQA IT EL EIVAGAEAL
Sbjct:  212 IYEPSPSAIIDVLVPKHLNTQIWRMMLESNAAEHASRMTAMDSATENAKELMRVLKISYNRARQAAITTELSEIVAGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_PROVI (ATP synthase gamma chain OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   68 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            N+G+     ++E  P+ I+  ++P ++N+Q+ R + ES A+E AARM+AM +AT+NA EL + L+++YN+ RQA IT EL EIV GA+AL
Sbjct:  200 NEGDRGGDYIYEPSPSAIISELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVGGADAL 289          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSU (ATP synthase gamma chain OS=Brucella suis GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSI (ATP synthase gamma chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUO2 (ATP synthase gamma chain OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUME (ATP synthase gamma chain OS=Brucella melitensis GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUMB (ATP synthase gamma chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUC2 (ATP synthase gamma chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831957 vs. ExPASy Swiss-Prot
Match: ATPG_BRUAB (ATP synthase gamma chain OS=Brucella abortus GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    8 LPMLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 337
            +P    NE +M    D++            +E DPA IL  ++P  ++ QI RAL E+ A E+ A+MSAM  AT NA ++   LS+ YN++RQA+IT EL+EI++GAEAL
Sbjct:  193 IPASADNEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
The following BLAST results are available for this feature:
BLAST of CF831957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_RHIE61.186e-1653.75ATP synthase gamma chain OS=Rhizobium etli (strain... [more]
ATPG_CHLPB1.186e-1653.09ATP synthase gamma chain OS=Chlorobium phaeobacter... [more]
ATPG_PROVI2.023e-1646.67ATP synthase gamma chain OS=Prosthecochloris vibri... [more]
ATPG_BRUSU2.023e-1642.73ATP synthase gamma chain OS=Brucella suis GN=atpG ... [more]
ATPG_BRUSI2.023e-1642.73ATP synthase gamma chain OS=Brucella suis (strain ... [more]
ATPG_BRUO22.023e-1642.73ATP synthase gamma chain OS=Brucella ovis (strain ... [more]
ATPG_BRUME2.023e-1642.73ATP synthase gamma chain OS=Brucella melitensis GN... [more]
ATPG_BRUMB2.023e-1642.73ATP synthase gamma chain OS=Brucella melitensis bi... [more]
ATPG_BRUC22.023e-1642.73ATP synthase gamma chain OS=Brucella canis (strain... [more]
ATPG_BRUAB2.023e-1642.73ATP synthase gamma chain OS=Brucella abortus GN=at... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831957 ID=CF831957; Name=CF831957; organism=Citrus sinensis; type=EST; length=571bp
GGATGAGTTGCCTATGTTGACAACTAATGAAGGGAAGATGATTGTCGAGA
GAGATAGCGTGACATTCAATAAAGGGGAATTATCGCCTCTTATGCTGTTT
GAGCAAGATCCGGCTCAGATTCTTGATGCGATGATGCCACTCTATATGAA
TAGTCAGATTTTGAGGGCATTGCAGGAGTCATTCGCTAGTGAGGTTGCAG
CGAGGATGAGTGCCATGAGTACTGCTACGGATAATGCTGATGAGTTGAAG
AAAAATCTTTCAGTTGCTTATAACCAAGAACGCCAGGCTAAAATCACTGG
TGAACTATTGGAGATTGTTGCTGGAGCCGAGGCACTTACACAGTTTGATT
AATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTTTTT
TTGTTTGGGGGGGTTGAGAATATTGCAGTTCACATCATATGCTAGTTAGT
ATATTCATCATTGAACGCTGGTTTATAATTTGTATTGATGACTTGAGTAT
TTCATATGGTAAACTAGAATGTCCAACGAAAAGAAATAACATTGTTTTTT
CTGGCAAAAAAAAAAAAAAAA
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