CF831959

Overview
NameCF831959
Unique NameCF831959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831959_ssr49 microsatellite CF831959_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12290 contig Csv1_Contig12290:487..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.396e-46
Identity = 82/124 (66.13%), Postives = 101/124 (81.45%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            GG C+PP  HFD+++P + +IA  ++GI+P+ +RR+ C + GGIRFT+NGHSYFNLVL+TNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYL GQSL F +T SD R+V S NV P  W
Sbjct:  119 GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.553e-45
Identity = 79/126 (62.70%), Postives = 99/126 (78.57%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            ++GGWCNPP QHFDM++PA+  IA  +AGIVP++++R+PC + GGIRF ++GH YF LV +TNVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSL F +   DGR VT+ NV P NW
Sbjct:  117 NSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.649e-45
Identity = 81/126 (64.29%), Postives = 99/126 (78.57%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP +HFDM++PA+  IA  RAGIVP+++RR+PC + GGIRF VNGHSYF LVL+TNVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L GQ+L F++ A DGR VT+ +V P  W
Sbjct:  113 DAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.459e-45
Identity = 81/126 (64.29%), Postives = 97/126 (76.98%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            +NGGWCNPP +HFDMA+PA+ +I   R GIVP+ F+R+ C KKGG+RF +NG  YF LV I NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL GQ+L F +T +DG T    NVVP +W
Sbjct:  115 NNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.901e-45
Identity = 76/126 (60.32%), Postives = 100/126 (79.37%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            ++GGWCNPP QHFDMA+PA+ QI   R GIVP++F+R+ C +KGG+RFT+NG+SYF LVLITNVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YL  Q++ F +T++ G+T+   +V P NW
Sbjct:  112 NDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.524e-44
Identity = 79/126 (62.70%), Postives = 96/126 (76.19%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP +HFDM++PA+  IA  +AGIVP++F+R+PC K GGIRFT++G  YF LV + NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YL  QSL F++   D R VT  N+ P NW
Sbjct:  111 DAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.607e-42
Identity = 75/127 (59.06%), Postives = 99/127 (77.95%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFNLV+++NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G+SL F++   D R  TS +V+P +W
Sbjct:  130 DNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDW 256          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.675e-42
Identity = 77/127 (60.63%), Postives = 98/127 (77.17%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFDMA+PAFL IA+ +AGIVPI ++++ C + GG+RFT+NG +YF LVLI+NV G G++  V IKGSK+  W+ MSRNWG N+QSN+YL GQSL F++  SDG    + NVVP NW
Sbjct:  117 DNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNW 243          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.106e-42
Identity = 75/128 (58.59%), Postives = 97/128 (75.78%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDMA+PA+ +I   R GIVP++FRR+PC ++GG+RFTV G  YF LVL+TNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL GQ L F++TA+DG+T+    VVP +W
Sbjct:  123 DDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42
Identity = 74/127 (58.27%), Postives = 92/127 (72.44%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFDMA+PA+ +I   RAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ L F++T  DG+T+   N+VP  W
Sbjct:  139 DNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA5_ARATH2.396e-4666.13Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA3_ORYSJ1.553e-4562.70Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ORYSJ2.649e-4564.29Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH3.459e-4564.29Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP12_ORYSJ5.901e-4560.32Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ6.524e-4462.70Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.607e-4259.06Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH4.675e-4260.63Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP29_ORYSJ6.106e-4258.59Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ7.975e-4258.27Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTGAACGCATTTATACCCGAATCATTCAATTGAAGTAATAACTA
TATATATAACACAATCATTTCTATTTATAGAGGCCTAACGGGTGCCAACA
GACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACC
TACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTA
AATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTC
AAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCA
CAGTCCTGCCGTCACTGGCTGTCAATTGGAAAAAAAGACTTTGGCCGATA
AGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTG
CCATCCAGTCTTTGAACCCTTGATTGATACTGAATGGACATCTCCTGCTC
CTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACG
GTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAAT
TGGGACGATACCGGCGCGGGATTGGGCAATTTGCAAGAAAGCGGGCTCAG
CCATGTCAAAGTGCTGGAAGGGAGGATTGCACCAACCGCCGTTGTC
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