CF831959

Overview
NameCF831959
Unique NameCF831959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.958e-41
Identity = 73/127 (57.48%), Postives = 92/127 (72.44%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFDMA+PA+ +I    AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+L F++T  DG+T+   N+VP  W
Sbjct:  123 DNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.751e-41
Identity = 73/127 (57.48%), Postives = 92/127 (72.44%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFDMA+PA+ +I   RAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ + GS  T W  M RNWG NW S SYL GQ L F++T  DG+T+   N+VP  W
Sbjct:  141 DNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 71/126 (56.35%), Postives = 100/126 (79.37%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDM++PA+  I   RAGIVP+ ++++ C ++GG+RFTV+G +YF LVLITNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L+GQ+L F++T++ G+T+  N+VVP  W
Sbjct:  116 DDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.464e-40
Identity = 70/127 (55.12%), Postives = 94/127 (74.02%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDMA+PA+ +I   R GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ L F++T +DG+T+   NVV   W
Sbjct:  123 DSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.749e-40
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP +HFDM++PA+  IA   +GIVP+ + R PC + GGIRF + GH Y+ LVL+TNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+L F++ A DG  VT+ +V P NW
Sbjct:  115 DAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.749e-40
Identity = 70/127 (55.12%), Postives = 91/127 (71.65%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP  HFDMA+PA+ +I    AGI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ L F++T +D +T+   NVVP  W
Sbjct:  128 DNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.172e-39
Identity = 69/126 (54.76%), Postives = 97/126 (76.98%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            ++GGWCNPP  HFDMAEPA+LQI   +AGI+P+ ++++ C ++GGIRFT+ G ++F LVL++NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L+GQ+L F +T++ G+T+   NVVP  W
Sbjct:  116 NSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.838e-39
Identity = 69/126 (54.76%), Postives = 96/126 (76.19%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            ++GGWCNPP  HFDMAEPA+LQI   +AGIVP+ ++R+PC K+GG+RFT+ G +YF LVLI+NV G+G + SV +KG  T    +SRNWG NWQS++ L+GQ+L F +T++ G+T+   N+VP  W
Sbjct:  121 NDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.349e-38
Identity = 67/125 (53.60%), Postives = 97/125 (77.60%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTA-SDGRTVTSNNVVPGNW 640
            GGWCNPP  HFDMA+PAF+++A  RAGI+P+++RR+PC + GG+RF   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSL F++T+ + G T+ + NV P NW
Sbjct:  125 GGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.986e-38
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            G WCNPP +HFD++ P FL+IAQ +AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ + F++T SDG T   NNV+P NW
Sbjct:  141 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP14_ORYSJ3.958e-4157.48Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ6.751e-4157.48Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ1.964e-4056.35Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ7.464e-4055.12Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ9.749e-4056.35Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ORYSJ9.749e-4055.12Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ2.172e-3954.76Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ4.838e-3954.76Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH5.349e-3853.60Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP25_ARATH6.986e-3853.23Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTGAACGCATTTATACCCGAATCATTCAATTGAAGTAATAACTA
TATATATAACACAATCATTTCTATTTATAGAGGCCTAACGGGTGCCAACA
GACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACC
TACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTA
AATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTC
AAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCA
CAGTCCTGCCGTCACTGGCTGTCAATTGGAAAAAAAGACTTTGGCCGATA
AGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTG
CCATCCAGTCTTTGAACCCTTGATTGATACTGAATGGACATCTCCTGCTC
CTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACG
GTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAAT
TGGGACGATACCGGCGCGGGATTGGGCAATTTGCAAGAAAGCGGGCTCAG
CCATGTCAAAGTGCTGGAAGGGAGGATTGCACCAACCGCCGTTGTC
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