CF831959

Overview
NameCF831959
Unique NameCF831959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831959_ssr49 microsatellite CF831959_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12290 contig Csv1_Contig12290:487..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.986e-38
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            G WCNPP +HFD++ P FL+IAQ +AG+VP+ +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ + F++T SDG T   NNV+P NW
Sbjct:  134 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 257          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.655e-37
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  269 WCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 634
            WCNPP +HFD++   FL+IA+ +AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ L F++T SDG T    NV+P NW
Sbjct:  140 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.318e-36
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP +HFDM++PA+ +I   RAGIVP+ +RR+ C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ L F +T + G+ +   +V P  W
Sbjct:  116 DGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.721e-36
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  269 WCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 634
            WCNPP +HFD++   FL+IA+ +AG+VP+ +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ L F++T +DG T    NV+P NW
Sbjct:  146 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.834e-36
Identity = 67/126 (53.17%), Postives = 92/126 (73.02%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCN P +HF+M+E AFL++A+++A IVP+ FRR+ C + GG+RFT+ G + F  VLITNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L GQ L F++T   GRTV + +V P +W
Sbjct:  122 DYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDW 247          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.007e-36
Identity = 69/126 (54.76%), Postives = 90/126 (71.43%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP  HFDM++PA+ QI   +AGIVP+ ++R+ C ++GG+RFTV G +YF LVLITNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+L F +T + G+ +   +V P  W
Sbjct:  117 DGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.007e-36
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GG CNPP  HF +   +F +IA  +AG++PI +RR+ C + GG+RF V G S+F  VLI+NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ L F+LT+SDG+T+T+ NVVP  W
Sbjct:  119 DAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.903e-35
Identity = 66/127 (51.97%), Postives = 93/127 (73.23%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGR-TVTSNNVVPGNW 646
            +NGGWCNPP  HFD+ +PAF++IA  +AGI+P+S+RR+ C K GGIRF   G+ Y+ LV + NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSL F+LT+   R T+ + N  P +W
Sbjct:  118 NNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.230e-35
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQ-SRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            +N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G   FN+V+I+NVGG G V SV+++GSK   W  M+RNWG NWQS+  L GQ L F++T +D +T T  NVVP +W
Sbjct:  111 NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.442e-35
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = -1
Query:  269 NGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 643
            N  WCNPP +HFD+++P FL+IA+ +AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ L F+LT SDG      +V P +W
Sbjct:  175 NDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP23_ARATH6.986e-3853.23Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP22_ARATH2.655e-3754.92Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP27_ORYSJ1.318e-3652.38Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP26_ARATH1.721e-3653.28Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP16_ORYSJ3.834e-3653.17Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ5.007e-3654.76Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ5.007e-3655.56Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH1.903e-3551.97Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP12_ARATH7.230e-3552.34Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP24_ARATH9.442e-3550.40Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTGAACGCATTTATACCCGAATCATTCAATTGAAGTAATAACTA
TATATATAACACAATCATTTCTATTTATAGAGGCCTAACGGGTGCCAACA
GACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACC
TACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTA
AATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTC
AAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCA
CAGTCCTGCCGTCACTGGCTGTCAATTGGAAAAAAAGACTTTGGCCGATA
AGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTG
CCATCCAGTCTTTGAACCCTTGATTGATACTGAATGGACATCTCCTGCTC
CTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACG
GTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAAT
TGGGACGATACCGGCGCGGGATTGGGCAATTTGCAAGAAAGCGGGCTCAG
CCATGTCAAAGTGCTGGAAGGGAGGATTGCACCAACCGCCGTTGTC
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