CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 9.236e-43
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = -1
Query:  164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469
            PV A +NCADN+GA+ LYII+VKG   RL RLP+A +GDMVMATVKKGKP+LRKKVMP+++VRQ K W R+DGVF+YFEDNAGVI NPKGEM+GSAITGP+G
Sbjct:   18 PVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVG 119          

HSP 2 Score: 31.187 bits (69), Expect = 9.236e-43
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            KEC DLWPR+AS +  +V
Sbjct:  120 KECADLWPRVASNSGVVV 137          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.567e-42
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI G+L RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 1.567e-42
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.518e-42
Identity = 76/101 (75.25%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LY+I+V GI GRL RLP+A VGDM +ATVKKGKP+LRKKVMP+V++RQ KP+ R+DGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 4.518e-42
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.518e-42
Identity = 75/101 (74.26%), Postives = 88/101 (87.13%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADN+GAK LYI+SV G   RL RLP+A  GDMV+ATVKKGKPDLRKK+MP+++VRQ K W RKDGV++YFEDNAGVIVNPKGEM+GSAITGP+
Sbjct:   20 PVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPV 120          

HSP 2 Score: 32.7278 bits (73), Expect = 4.518e-42
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            KEC DLWPRIAS A  +V
Sbjct:  122 KECADLWPRIASNAGTVV 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.888e-42
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 29.6462 bits (65), Expect = 5.888e-42
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWP IAS A +I
Sbjct:  123 KECADLWPXIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 7.672e-42
Identity = 76/101 (75.25%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LY+I+V GI GRL RLP+A VGDM +ATVKKGKP+LRKKVMP+V++RQ KP+ R+DGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 32.3426 bits (72), Expect = 7.672e-42
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A++I
Sbjct:  123 KECADLWPRIASNASSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.654e-38
Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK L++ISV GI GRL RLPSA VGDM + +VKKGKP+LRKKV+  V++RQ K + RKDG F+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 30.8018 bits (68), Expect = 3.654e-38
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIA+ A +I
Sbjct:  123 KECADLWPRIAANAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.951e-37
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK L++I+V GI GRL RLPSA VGDM +A+VKKGKP+LRKKV+ +V+VRQ K + R DG  +YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 3.951e-37
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.139e-36
Identity = 71/101 (70.30%), Postives = 85/101 (84.16%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +N ADN+GAK LY+I+VKGI GRL RLPSA VGDMVMATVKKGKP+LRKKV   ++VRQ K W RKDGV++YFEDNAGV+ NPKGE++G+ I GP+
Sbjct:   18 PVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPV 117          

HSP 2 Score: 30.4166 bits (67), Expect = 1.139e-36
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            KEC DLWP++A+ A  IV
Sbjct:  119 KECSDLWPKVATNAGTIV 136          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.130e-32
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKG-EMQGSAITGPI 469
            PV A VNCADNTGAK LYIISVKG  GRL RLP+A +GD+VMA+VKKGKP+LR+KV+ +VI+RQ K W RKDG  +YFEDNAGVIVN +G + + S I GP+
Sbjct:   20 PVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPV 121          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL23_YEAST9.236e-4374.5160S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_PONAB1.567e-4278.2260S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_AEDAE4.518e-4275.2560S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_SCHPO4.518e-4274.2660S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_CANFA5.888e-4279.2160S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_DROME7.672e-4275.2560S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_CAEEL3.654e-3871.2960S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_BRUMA3.951e-3770.3060S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_DICDI1.139e-3670.3060S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR2.130e-3267.6560S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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