CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGAK L  I V G +GR      A +GD ++ATVK   P    K   ++ +V+VR  K   R DG ++ F++NA V++   G+ +G+ I GP+G
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PELPD (50S ribosomal protein L14 OS=Pelobacter propionicus (strain DSM 2379) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            ++ ADN+GAK L+ I V G + R      A VGD+++A+V++  P+ + K   V+ +VIVR  K   R DG ++ F+DN+GV++N + E  G+ I GP+
Sbjct:    8 LDVADNSGAKKLFCIKVLGGSKRKY----AGVGDIIVASVREALPNSKVKKGDVVKAVIVRTAKELGRPDGSYIRFDDNSGVVINNQKEPVGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_BEUC1 (50S ribosomal protein L14 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGAK +  I V G +GR      A +GD+++ATVK   P     R  V+ +V+VR  K   R DG ++ F++NA V++   GE +G+ I GP+G
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRPDGSYIRFDENAAVLLKSDGEPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I + G + R      A +GD+++A +KK  P+    R +V+ +VIVR CK   R++G+ + ++DNA V+++ +G  +G+ I G I
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_AMBTC (50S ribosomal protein L14, chloroplastic OS=Amborella trichopoda GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.618e-11
Identity = 34/99 (34.34%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I + G +        A +GD+++A +K+  P++   R +V+ +VIVR CK   R +G+ + ++DNA V+++P+G  +G+ + G I
Sbjct:    8 LNVADNSGARELMCIRIVGASNPRY----AHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGIIIRYDDNAAVVIDPEGNPKGTRVFGSI 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_STRGG (50S ribosomal protein L14 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGAK +  I V G +GR      A +GD+++ATVK   P    K   V+ +VIVR  K   R+DG ++ F++NA VI+   G+ +G+ I GP+G
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGA+ +  I V G +GR      A +GD+++ATVK   P    K   V+ +V+VR  K   R DG ++ F++NA VI+   G+ +G+ I GP+G
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGA+ +  I V G +GR      A +GD+++ATVK   P    K   V+ +V+VR  K   R DG ++ F++NA VI+   G+ +G+ I GP+G
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_NOCSJ (50S ribosomal protein L14 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  164 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 445
            ADNTGAK +  I V G +GR      A +GD+++ATVK   P    K   V+ +V+VR  K   R DG ++ F++NA VI+   GE +G+ I GP+G
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVG 103          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CHLTE (50S ribosomal protein L14 OS=Chlorobium tepidum GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GD +M +VK   P     +K V  +V+VR  K   RKDG ++ F++NA V++N +GE +G+ I GP+
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVSVKAAVPGGVVKKKDVCKAVVVRCVKEQKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPV 102          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_THEFY4.618e-1140.2150S ribosomal protein L14 OS=Thermobifida fusca (s... [more]
RL14_PELPD4.618e-1139.3950S ribosomal protein L14 OS=Pelobacter propionicu... [more]
RL14_BEUC14.618e-1141.2450S ribosomal protein L14 OS=Beutenbergia cavernae... [more]
RK14_CUCSA4.618e-1136.3650S ribosomal protein L14, chloroplastic OS=Cucumi... [more]
RK14_AMBTC4.618e-1134.3450S ribosomal protein L14, chloroplastic OS=Ambore... [more]
RL14_STRGG6.031e-1142.2750S ribosomal protein L14 OS=Streptomyces griseus ... [more]
RL14_SALTO6.031e-1140.2150S ribosomal protein L14 OS=Salinispora tropica (... [more]
RL14_SALAI6.031e-1140.2150S ribosomal protein L14 OS=Salinispora arenicola... [more]
RL14_NOCSJ6.031e-1142.2750S ribosomal protein L14 OS=Nocardioides sp. (str... [more]
RL14_CHLTE6.031e-1141.6750S ribosomal protein L14 OS=Chlorobium tepidum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
back to top