CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I V G + R      A +GDMV+A VK+  P++   + +++ +VIVR  K   R +G+ + F+DNA V++N +G  +G+ + GP+
Sbjct:    8 LNVADNSGARKLMCIRVLGSSNRKY----AHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_MESVI (50S ribosomal protein L14, chloroplastic OS=Mesostigma viride GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GAK +  I V G + R      A +GD+++  VK   P++   + +V+ +V+VR CK   R++G+ + F+DNA V++N  G  +G+ + GP+
Sbjct:    8 LNVADNSGAKKIMCIRVLGGSQRKY----AAIGDVIIGVVKDSVPNMSLKKSEVVRAVVVRTCKGIRRENGMTIRFDDNAAVVINKDGNPKGTRVFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_SULDN (50S ribosomal protein L14 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKK---VMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADNTGAK +  I V G + R      A VGD+++A+VKK  P  + K   V+ +VIVR  K   R++G  + F+DNA VI++ K E  G+ I GPI
Sbjct:    8 LNVADNTGAKEVMCIKVLGGSKRRY----AQVGDVIIASVKKATPTAKVKKGKVVKAVIVRTAKEIHRENGSLIRFDDNAAVILDDKREPIGTRIFGPI 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PROVI (50S ribosomal protein L14 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GD V+ +VK   P     +K+V  +V+VR  K   RKDG ++ F++NA V++N +GE +G+ I GP+
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQVIVSVKAAVPGGVVKKKEVCKAVVVRCAKELRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_CHLCH (50S ribosomal protein L14 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  167 ADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPD---LRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 445
            ADN+GAK +  I V G TGR      A +GD V+ +VK   P     +K V  +V+VR  K   RKDG ++ F++NA VI+N +GE +G+ I GP+
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQVIVSVKTAVPGGIVKKKDVCKAVVVRAVKESRRKDGSYIRFDENAVVILNAQGEPRGTRIFGPV 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_NICTO (50S ribosomal protein L14, chloroplastic OS=Nicotiana tomentosiformis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 35/99 (35.35%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  167 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 454
            +N ADN+GA+ L  I + G + R      A +GD+++A +K+  P++   R +V+ +VIVR CK   R +G+ + ++DNA V+++ +G  +G+ I G I
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNMPLERSEVVRAVIVRTCKELKRDNGIIIRYDDNAAVVIDQEGNPKGTRIFGAI 102          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RK14_IPOPU (50S ribosomal protein L14, chloroplastic OS=Ipomoea purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 36/106 (33.96%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  146 VNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDL---RKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG*RVWRF 454
            +N ADN+GA+ L  I + G + R      A +GD+++A +K+  P++   R +V+ +VIVR CK   R +G+ + ++DNA V+++ +G  +G+ I G I   + +F
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDKEGNPKGTRIFGAIARELRQF 109          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RK14_ZYGCR6.031e-1137.3750S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK14_MESVI6.031e-1135.3550S ribosomal protein L14, chloroplastic OS=Mesost... [more]
RL14_SULDN7.876e-1143.4350S ribosomal protein L14 OS=Sulfurimonas denitrif... [more]
RL14_PROVI7.876e-1141.6750S ribosomal protein L14 OS=Prosthecochloris vibr... [more]
RL14_CHLCH7.876e-1142.7150S ribosomal protein L14 OS=Chlorobium chlorochro... [more]
RK14_NICTO7.876e-1135.3550S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_IPOPU7.876e-1133.9650S ribosomal protein L14, chloroplastic OS=Ipomoe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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