CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.036e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ A + C DNTGAK + +I VK +     R+P+A VGDM +A+VKKG P++R KV+ +V+VRQ +P+ R DG  + FEDNA V+V P GE++GS I GP+
Sbjct:   13 PLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPV 113          

HSP 2 Score: 23.0978 bits (48), Expect = 1.036e-23
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            +E  + WPRIA+ ++ IV
Sbjct:  115 REAAERWPRIAAISSTIV 132          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.036e-23
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P+ A + C DNTGA+ + IISVKG  G   RL SA VGDMV+ +VKKG  D+R++V  +V+VRQ K + R DG+ + FEDNA VI+   G ++GS I GPI
Sbjct:   13 PIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPI 113          

HSP 2 Score: 28.1054 bits (61), Expect = 1.036e-23
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            KE  DLWP I SAA+ IV
Sbjct:  115 KEAADLWPAIGSAASIIV 132          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L +I+VK   G + RLP+  VG MV  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLVCADNTGAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_META3 (50S ribosomal protein L14P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.361e-23
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            P  A + CADNTGAK L II+VKG  G   RLP+  VG +V  +VKKG P++RK+V+P++I+RQ K + R DG  + FEDNA VIV P+G  +GS I GP+
Sbjct:   13 PNGARLICADNTGAKELEIIAVKGYKGVARRLPAGGVGSLVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRPDGSRVKFEDNAAVIVTPEGSPKGSEIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.361e-23
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V + V  ADN+GAK   II V G  GRL R+P A VGDMV+ TVKKG P++RK+V+ ++++RQ +P+ R DG ++ FEDNA VIV+P G  +GS I GP+
Sbjct:   20 VGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPV 119          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.259e-23
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V + V  ADN+GAK + II V G  GRL R+P A +GD+V+ TVKKG P++RK+V+ +VIVRQ +P+ R DG ++ FEDNA  IV P+G  +GS I GPI
Sbjct:   22 VGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPI 121          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.868e-23
Identity = 55/101 (54.46%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A   CADNTGAK + II+V+   G   RLP+A VGDMV+ TVKKG P++RK+V+P+V++RQ K   R DG  + F DNA VIV P G  +GS I GP+
Sbjct:   13 PVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPV 113          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.435e-22
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  167 VAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 466
            V + V  ADN+GAK + IISV  +  RL RLPSA VGD+V+ +VKKG P +R++V+ +V+VRQ +P+ R DG ++ FEDNA VIVNP G  +GS + GPI
Sbjct:   22 VGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPI 121          

HSP 2 Score: 22.7126 bits (47), Expect = 1.435e-22
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = -2
Query:  109 KECGDLWPRIASAANAIV 162
            +E  + WPR+A  A  IV
Sbjct:  123 REAAERWPRVAKIATMIV 140          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A + CADNTGAK L II V G  GR  R+P+A VGDMV   VK+GK DL  K   +++VRQ  P+ RK+G ++ FEDNA V+VN  G  +GS   GPI
Sbjct:   22 PVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPI 122          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL14_PICTO1.036e-2350.5050S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_METST1.036e-2352.4850S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_METMP1.807e-2352.4850S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METM51.807e-2352.4850S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_META32.361e-2353.4750S ribosomal protein L14P OS=Methanococcus aeolic... [more]
RL14_HYPBU2.361e-2353.0050S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_STAMF5.259e-2354.0050S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL14_METJA6.868e-2354.4650S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_AERPE1.435e-2254.0050S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_KORCO1.530e-2253.4750S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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